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Publications by Core Faculty

  • 2022

     

    Belato, H. B., D'Ordine, A. M., Nierzwicki, L., Arantes, P. R., Jogl, G., Palermo, G., & Lisi, G. P. (2022). Structural and dynamic insights into the HNH nuclease of divergent Cas9 species. Journal of Structural Biology, 214(1), 107814. DOI: https://doi.org/10.1016/j.jsb.2021.107814.

    Espinoza EM, Clark JA, Billones MK, Silva GTM, Silva CP, Quina FH, Vullev VI. (2022) Photophysics and Electrochemistry of Biomimetic Pyranoflavyliums: What Can Bioinspiration from Red Wines Offer? Photochem, 2(1), 9-31. https://doi.org/10.3390/photochem2010003

    Langley J, Hussain S, Huddleston DE, Bennett IJ, and Hu X. Impact of Locus Coeruleus and Its Projections on Memory and Aging. Brain Connect (in press).

    Langley J, Hussain S, Huddleston DE, Bennett IJ, and Hu X. Impact of Locus Coeruleus and Its Projections on Memory and Aging. Brain Connect (in press).

    Reardon AM, Li K, and Hu X. Improving Between-Group Effect Size for Multi-Site Functional Connectivity Data via Site-Wise De-Meaning. Frontiers Comput Neurosci (accepted).

    O'Mari O, Vullev VI. (2022) Electrochemical Analysis in Charge-Transfer Science: The Devil in the Details. Current Opinion in Electrochemistry, 31, 100862. DOI: 10.1016/j.coelec.2021.100862.

    Reardon A, Li K, Langley, and Hu X. Subtyping autism spectrum disorder via joint modeling of clinical and connectomic profiles. Brain Connect (in press).

    Schwan J, Alva TR, Nava G, Rodriguez CB, Dunn Z, Chartron JW, Morgan JT, Wang P, Mangolini L. (2021) Efficient Facemask Decontamination via Forced Ozone Convection. Scientific Reports. In Press.

    Yu S, Milam-Guerrero J, Tai Y, Yang S, Choi Y, Nam J, Myung NV. (in press) Maximizing polyacrylonitrile nanofiber piezoelectric properties through optimization of electrospinning and post thermal treatment processes. ACS Applied Polymer Materials. DOI: https://doi.org/10.1021/acsapm.1c01549.

  • 2021

    Anvari, B. (2021). Grand challenges and opportunities in biophotonics. Frontiers in Photonics, 2, 719131. https://www.frontiersin.org/articles/10.3389/fphot.2021.719131/full

    Banerjee A, Jariwala T, Kim S, Tai Y, Chiang S, Park H, Myung NV, Nam J. (2021) A facile method for synthesizing polymeric nanofiber-fragments. Nano Select 202100194. DOI: https://doi.org/10.1002/nano.202100194.

    Banerjee A, Jariwala T, Baek Y, To D, Tai Y, Liu J, Park H, Myung NV, Nam J. (2021) Magneto- and opto-stimuli responsive nanofibers as a controlled drug delivery system. Nanotechnology 32(50):5101. DOI: DOI: 10.1088/1361-6528/ac2700.

    Burns JM, Shafer E, Vankayala R, Kundra, V, Anvari, B. (2021). Near infrared fluorescence imaging of intraperitoneal ovarian tumors in mice using erythrocyte-derived optical nanoparticles and spatially-modulated illumination. Cancers,13, 2544. https://www.mdpi.com/2072-6694/13/11/2544.

    Clark JA, Orłowski R, Derr JB, Espinoza EM, Gryko DT, Vullev VI. (2021) How Does Tautomerization Affect the Excited-State Dynamics of an Amino Acid-Derivatized Corrole?  Photosynthesis Research. 148, 67-76. DOI: 10.1007/s11120-021-00824-4.

    Derr JB, Rybicka-Jasińska K, Espinoza EM, Morales M, Billones MK, Clark JA, Vullev VI (2021) On the Search of a Silver Bullet for the Preparation of Bioinspired Molecular Electrets with Propensity to Transfer Holes at High Potentials. Biomolecules. 11(3), 429. DOI:  10.3390/biom11030429.

    Farag, N., Mattossovich, R., Merlo, R., Nierzwicki, Ł., Palermo, G., Porchetta, A., Perugino, G., & Ricci, F. (2021). Folding‐upon‐repair DNA nanoswitches for monitoring the activity of DNA repair enzymes. Angewandte Chemie, 133(13), 7359–7365.
    DOI: https://doi.org/10.1002/ange.202016223.

    Farajpour, N, Lastra, LS, Sharma, V, & Freedman, K J (2021). Calibration-Less DNA Concentration Measurements Using EOF Volumetric Flow and Single Molecule Counting. Frontiers in Nanotechnology, 58.  DOI: 10.3389/fnano.2021.689584.

    Farajpour, N, Lastra, LS, Sharma, V, & Freedman, KJ (2021). Measuring trapped DNA at the liquid-air interface for enhanced single molecule sensing. Nanoscale, 13(11), 5780-5790.  DOI: 10.1039/D0NR07759C.

    Franco CY, Petok JR, Langley J, Hu X, and Bennett IJ. Implicit associative learning relates to basal ganglia gray matter microstructure in young and older adults. Behav Brain Res 397, 2021; https://doi.org/10.1016/j.bbr.2020.112950.

    Guo J, Das S, Hernandez-Garcia L. (2021) Comparison of velocity-selective arterial spin labeling schemes. Magn Reson Med. 85(4):2027-39.

    Hanley T, Vankayala R, Lee CH, Tang, JC, Burns JM, Anvari B. (2021). Phototheranostics using erythrocyte-based particles. Biomolecules, 11, 729,  https://www.mdpi.com/2218-273X/11/5/729.

    Hariharan C, Tao YR, Jiang L, Wen X, Liao J. (2021) Assay technologies for apoptosis and autophagy. Medicine in Drug Discovery. Vol.11, Sep., 100100. https://doi.org/10.1016/j.medidd.2021.100100.

    Jariwala T, Ico G, Tai Y, Park H, Myung NV, Nam J. (2021) Mechano-responsive piezoelectric nanofiber as an on-demand drug delivery vehicle. ACS Applied Bio Materials 4(4):3706-3715. DOI: https://doi.org/10.1021/acsabm.1c00232.

    Langley J, Hussain S, Huddleston DE, and Hu X. Nigral diffusivity, but not free water, correlates with iron content in Parkinson’s disease. Brain Comm Volume 3, Issue 4, 2021, fcab251, https://doi.org/10.1093/braincomms/fcab251.

    Lastra, LS, Sharma, V, Farajpour, N, Nguyen, M, & Freedman, KJ (2021). Nanodiagnostics: A review of the medical capabilities of Nanopores. Nanomedicine: Nanotechnology, Biology and Medicine, 102425.

    Li C, Li Z, Hu X, Bachevalier J, and Zhang X. Altered hippocampal-prefrontal functional network integrity in adult macaque monkeys with neonatal hippocampal lesions. NeuroImage 227, 2021; https://doi.org/10.1016/j.neuroimage.2020.117645.

    Li C, Luo FM, Liu CW, Xiong NA, Xu ZH, Zhang W, Yang M, Wang Y, Liu D, Yu C, Zeng J, Zhang L, Li D, Liu Y, Feng M, Liu RY, Mei JD, Deng SY, Zeng Z, He YH, Liu HY, Shi ZY, Duan M, Kang DY, Liao J, Li WM, Liu LX. (2021) Effect of a genetically engineered interferon alpha versus traditional interferon-alpha in the treatment of moderate-to-severe COVID-19: a randomized clinical trial. ANNALS OF MEDICINE, VOL. 53, NO. 1, 391–401. https://doi.org/10.1080/07853890.2021.1890329.

    Liao J, Madahar V, Dang R, Jiang L. (2021) Quantitative FRET (qFRET) Technology for the Determination of Protein–Protein Interaction Affinity in Solution. (2021) Molecules. 2021 Nov; 26(21): 6339. https://doi.org/10.3390/molecules26216339.

    Liu Y, Shen YL, Song Y, Xu L, J. Perry JP and Liao J. (2021) Isopeptidase Kinetics Determination by a Real Time and Sensitive qFRET Approach. Biomolecules. 11, 673. https://doi.org/10.3390/biom11050673.

    Liu Y, Zhang F, Jiang L, Perry JP, Zhao ZW, Liao J. (2021) Product Inhibition Kinetics Determinations - Substrate Interaction Affinity and Enzymatic Kinetics using One Quantitative FRET Assay. International Journal of Biological Macromolecules. Volume 193, Part B, 15 December 2021, Pages 1481-1487. https://doi.org/10.1016/j.ijbiomac.2021.10.211.

    Manigrasso, J., De Vivo, M., & Palermo, G. (2021). Controlled trafficking of multiple and diverse cations prompts nucleic acid hydrolysis. ACS Catalysis, 11(14), 8786–8797. DOI: https://doi.org/10.1021/acscatal.1c01825.

    Narkhede, Y. B., Gautam, A. K., Hsu, R. V., Rodriguez, W., Zewde, N. T., Harrison, R. E., Arantes, P. R., Gaieb, Z., Gorham, R. D., Kieslich, C., Morikis, D., Sahu, A., & Palermo, G. (2021). Role of electrostatic hotspots in the selectivity of complement control proteins toward human and bovine complement inhibition. Frontiers in Molecular Biosciences, 8. DOI: https://doi.org/10.3389/fmolb.2021.618068.

    Nierzwicki, Ł., East, K. W., Morzan, U. N., Arantes, P. R., Batista, V. S., Lisi, G. P., & Palermo, G. (2021). Enhanced specificity mutations perturb allosteric signaling in CRISPR-Cas9. biorxiv,  DOI: https://doi.org/10.1101/2021.09.14.460226.

    Nierzwicki, Ł., & Palermo, G. (2021). Molecular dynamics to predict cryo-em: Capturing transitions and short-lived conformational states of biomolecules. Frontiers in Molecular Biosciences, 8. DOI: https://doi.org/10.3389/fmolb.2021.641208.

    Orłowski R, Clark JA,  Derr JB,  Espinoza EM,  Mayther MF, Staszewska-Krajewska O,  Winkler JR, Jędrzejewska H, Szumna A, Gray HB, Vullev VI, Gryko DT. (2021) Role of Intramolecular Hydrogen Bonds in Promoting Electron Flow through Amino Acid and Oligopeptide Conjugates. Proceedings of the National Academy of Sciences of the United States of America. 118(11), e2026462118.  DOI: 10.1073/pnas.2026462118.

    Palermo, G., Spinello, A., Saha, A., & Magistrato, A. (2021). Frontiers of metal-coordinating drug design. Expert opinion on drug discovery, 16(5), 497-511. DOI: https://doi.org/10.1080/17460441.2021.1851188.

    Pieczykolan M, Derr JB, Chrayteh A, Koszarna B, Clark JA, Vakuliuk O, Jacquemin D, Vullev VI, Gryko DT. (2021) The Synthesis and Photophysical Properties of Weakly Coupled Diketopyrrolopyrroles. Molecules. 26(16), 4744.  DOI: 10.3390/molecules26164744.

    Rybicka-Jasińska K, Derr JB, Vullev VI. (2021) What Defines Biomimetic and Bioinspired Science and Engineering?  Pure and Applied Chemistry. 93(11), 1275-1292.  DOI: 10.1515/pac-2021-0323.

    Rybicka-Jasińska K, Espinoza EM, Clark JA, Derr JB, Carlos G, Morales M, Billones MK, O’Mari O, Ågren H, Baryshnikov GV, Vullev VI. (2021) Making Nitronaphthalene Fluoresce. The Journal of Physical Chemistry Letters. 12 (42), 10295-10303.  DOI: 10.1021/acs.jpclett.1c02155.

    Sadowski B, Kaliszewska M, Poronik YM, Czichy M, Janasik P, Banasiewicz M, Mierzwa D, Gadomski W, Lohrey TD, Clark JA, Łapkowski M, Kozankiewicz B, Vullev VI, Sobolewski AL, Piatkowski P, Gryko DT. (2021) Potent Strategy towards Strongly Emissive Nitroaromatics through a Weakly Electron-Deficient Core. Chemical Science. 12, 14039-14049.  DOI: 10.1039/d1sc03670j.

    Sanchez MM, Morgan JT (2021) Generation of self-assembled vascularized human skin equivalents. Journal of Visual Experiments. 168. PMID: 33645584 DOI: 10.3791/62125.

    Schwan J, Alva TR, Nava G, Rodriguez CB, Dunn Z, Chartron JW, Morgan JT, Wang P, Mangolini L. (2021) Efficient Facemask Decontamination via Forced Ozone Convection. Preprint: arXiv:2007.09280.

    Sharma, V, & Freedman, KJ (2021). Pressure-Biased Nanopores for Excluded Volume Metrology, Lipid Biomechanics, and Cell-Adhesion Rupturing. ACS Nano 2021 15 (11), 17947-17958. DOI: 10.1021/acsnano.1c06393.

    Sharma, V, & Freedman, KJ (2021). Constricted Apertures for Dynamic Trapping and Micro-/Nanoscale Discrimination Based on Recapture Kinetics. Nano Letters, 21(8), 3364-3371.  DOI: 10.1021/acs.nanolett.0c04392.

    Tai Y, Banerjee A, Goodrich R, Jin L, Nam J. (2021) Development and Utilization of Multifunctional Polymeric Scaffolds for the regulation of Physical Cellular Microenvironments. Polymers 13(22), 3880. DOI: https://doi.org/10.3390/polym13223880.

    Tai Y, Ico G, Low K, Liu J, Jariwala T, Garcia-Viramontes D, Lee KH, Myung NV, Park BH, Nam J. (2021) Formation of 3D Self-Organized Neuron-Glial Interface Derived from Neural Stem Cells via Mechano-Electrical Stimulation. Advanced Healthcare Materials 2100806. DOI: https://doi.org/10.1002/adhm.202100806.

    Tai Y, Yang S, Yu S, Banerjee A, Myung NV, Nam J. (2021) Modulation of piezoelectric properties in electrospun PLLA nanofibers for application-specific self-powered stem cell culture platforms. Nano Energy 89:106444. DOI: https://doi.org/10.1016/j.nanoen.2021.106444.

    Terry TL, Givens BE, Adamcakova-Dodd A, Thorne PS, Rodgers VGJ, Salem AK (2021) Encapsulating polyethyleneimine-DNA nanoplexes into PEGylated biodegradable microparticles increases transgene expression in vitro and reduces inflammatory responses in vivo. AAPS PharmSciTech, 2021 Feb 9;22(2):69. doi: 10.1208/s12249-021-01932-z.

    Wang, J., Arantes, P. R., Bhattarai, A., Hsu, R. V., Pawnikar, S., Huang, Y. M., Palermo, G., & Miao, Y. (2021). Gaussian accelerated molecular dynamics: Principles and applications. WIREs Computational Molecular Science, 11(5). DOI: https://doi.org/10.1002/wcms.1521.

    Wang L, Li K, and Hu X. Graph convolution network for fMRI analysis based on connectivity neighborhood. Network Neurosci 5(1): 83-95, 2021; https://doi.org/10.1162/netn_a_00171.

    Zhao MJ, Fan AP, Chen DY, Sokolska MJ, Guo J, Ishii Y, Shin DD, Khalighi MM, Holley D, Halbert K, Otte A, Williams B, Rostami T, Park JH, Shen B, Zaharchuk G. (2021) Cerebrovascular reactivity measurements using simultaneous 15O-water PET and ASL MRI: Impacts of arterial transit time, labeling efficiency, and hematocrit. NeuroImage. 233:117955. doi: 10.1016/j.neuroimage.2021.117955.

    Zhang X, Li C, Yan Y, Nair G, Rilling JK, Herndon JG, Preuss TM, Hu X, and Li L. In-vivo diffusion MRI protocol optimization for the chimpanzee brain and examination of aging effects on the primate optic nerve at 3T. Magn Reson Imag 77: 194-203, 2021; https://doi.org/10.1016/j.mri.2020.12.015.

    Zewde, N. T., Hsu, R. V., Morikis, D., & Palermo, G. (2021). Systems biology modeling of the complement system under immune susceptible pathogens. Frontiers in Physics, 9. DOI: https://doi.org/10.3389/fphy.2021.603704
     

  • 2020

    Arantes, P. R., Saha, A., & Palermo, G. (2020). Fighting covid-19 using molecular dynamics simulations. ACS Central Science, 6(10), 1654–1656. 
    DOI: https://doi.org/10.1021/acscentsci.0c01236.

    Arnold AJ, Haworth JL, Moran VO, Abulhasan A, Steinbuch N, Kokkoni E. (2020) Exploring the Unmet Need for Technology to Promote Motor Ability in Children Younger Than 5 Years of Age: A Systematic Review. Archives of Rehabilitation Research and Clinical Translation. 2(2),100051. DOI: https://doi.org/10.1016/j.arrct.2020.100051.

    Casalino, L., Nierzwicki, Ł., Jinek, M., & Palermo, G. (2020). Catalytic mechanism of non-target DNA cleavage in CRISPR-Cas9 revealed by ab initio molecular dynamics. ACS Catalysis, 10(22), 13596–13605. DOI: https://doi.org/10.1021/acscatal.0c03566.

    Chen DY, Ishii Y, Fan AP, Zhao MY, Guo J, Steinberg GK, Zaharchuk G. (2020) Predicting PET Cerebrovascular Reserve with Deep Learning using Baseline MRI: Towards a “Drug-free” Brain Stress Test. Radiology. doi: https://doi.org/10.1148/radiol.2020192793.

    Cui, J. Y., Zhang, F., Nierzwicki, L., Palermo, G., Linhardt, R. J., & Lisi, G. P. (2020). Mapping the structural and dynamic determinants of ph-sensitive heparin binding to granulocyte macrophage colony stimulating factor. Biochemistry, 59(38), 3541–3553. 
    DOI: https://doi.org/10.1021/acs.biochem.0c00538.

    Deng MY, Jiang L, Ren Y, and Liao J. (2020) Can We Reduce Mortality of COVID-19 if We do Better in Glucose Control? Med Drug Discov. Volume 5, March. doi: 10.1016/j.medidd.2020.100037.

    Derr JB, Tamayo J, Clark JA, Morales M, Mayther MF, Espinoza EM, Rybicka-Jasińska K, Vullev VI (2020) Multifaceted aspects of charge transfer, Phys. Chem. Chem. Phys., 22 (38), 21583-21629.  DOI: 10.1039/D0CP01556C.

    Derr JB, Clark JA, Morales M, Espinoza EM, Vadhin S, Vullev VI (2020) Solvent-induced selectivity of Williamson etherification in the pursuit of amides resistant against oxidative degradation, RSC Adv., 10, 24419-24424. DOI: 10.1039/D0RA04465B.

    East KW, Skeens E, Cui YJ, Belato EH, Mitchell BP, Hsu RV, Batista VS, Palermo G, Lisi GP (2020) NMR and computational methods for molecular resolution of allosteric pathways in enzyme complexes. Biophys. Rev. vol. 1-20.

    East KW, Newton JC, Morzan UN, Narkhede YB, Acharya A, Skeens E, Jogl G, Batista VS, Palermo G†, Lisi GP† (2020) Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics. J. Am. Chem. Soc. vol. 142, pages 1348-1358.

    Erudaitius DT, Buettner GR, Rodgers VGJ (2020) The latency of peroxisomal catalase in terms of effectiveness factor for pancreatic and glioblastoma cancer cell lines in the presence of high concentrations of H2O2: Implications for the use of pharmacological ascorbate in cancer therapy, Free Radical Biology and Medicine, Volume 156,Pages 20-25, ISSN 0891-5849, https://doi.org/10.1016/j.freeradbiomed.2020.05.023.

    Goliszewsk K, Rybicka-Jasińska K, Clark JA, Vullev VI, Gryko D (2020) Photoredox Catalysis: The Reaction Mechanism Can Adjust to Electronic Properties of a Catalyst. ACS Catal.,10, 5920–5927. DOI: 10.1021/acscatal.0c00200.

    Guo J, Gong E, Fan AP, Goubran M, Khalighi MM, Zaharchuk G. (2020) Predicting 15O-Water PET Cerebral Blood Flow Maps from Multi-contrast MRI Using a Deep Convolutional Neural Network with Evaluation of Training Cohort Bias. JCBFM. 40(11):2240-53.

    Hale CS, Yonan JM, Batarseh R, Chaar R, Jonak CR, Binder DK, Rodgers VGJ (2020) Implantable Osmotic Transport Device Can Reduce Edema After Severe Contusion Spinal Cord Injury, Frontiers in Bioengineering and Biotechnology: Biomechanics, 8, 806,  https://doi.org/10.3389/fbioe.2020.00806.

    Hanley TM, Vankayala R, Mac JT, Lo DD, Anvari B. (2020). The acute immune response of micro- and nanosized erythrocyte-derived optical particles in healthy mice. Molecular Pharmaceutics, 17, 3900-3914. https://pubs.acs.org/doi/10.1021/acs.molpharmaceut.0c00641.

    Harrison REH, Zewde NT,  Narkhede YB, Hsu RV, Morikis D, Vullev V†, Palermo G†. (2020) Factor-H Inspired Design of Peptide Biomarkers of the Complement C3d Protein. ACS Med. Chem. Lett. 2020, in press. DOI: https://doi.org/10.1021/acsmedchemlett.9b00663.  

    Huang J, Zheng L, Li Z, Hao SY, Ye FF, Chen J, Gans HA , Yao XM, Liao J, Wang S, Zeng MF, Qiu LP, Li CY, Whitin JC, Tian L, Chubb H, Hwa KY, Ceresnak SR, Zhang W, Lu Y, Maldonado YA, McElhinney DB, Sylvester KG, Cohen HJ, Liu L, Ling XB. (2020) Kinetics of SARS-CoV-2 positivity of infected and recovered patients from a single center. Sci Rep. Oct 29;10(1):18629. doi: 10.1038/s41598-020-75629-x.

    Jia W, Burns, JM, Villantay B, Tand JC, Vankayala R, Lertsakdadet B, Choi B, Nelson JS, Anvari B (2020) Intravital Vascular Phototheranostics and Real-Time Circulation Dynamics of Micro- and Nanosized Erythrocyte-Derived Carriers. ACS Appl Mater Interfaces. 2020. PMID: 27966473. https://doi.org/10.1021/acsami.9b18624.

    Kokkoni E, Galloway JC. (2019) User-centred assistive technology assessment of a portable open-area body weight support system for in-home use. Disability and Rehabilitation: Assistive Technology. 2019, in press. DOI: https://doi.org/10.1080/17483107.2019.1683236.

    Kokkoni E, Liu Z, Karydis K. (2020) Development of a Soft Robotic Wearable Device to Assist Infant Reaching. Journal of Engineering and Science in Medical Diagnostics and Therapy. 3(2), 021109. DOI: https://doi.org/10.1115/1.4046397.

    Kokkoni E, Mavroudi E, Zehfroosh A, Galloway JC, Vidal R, Heinz J, Tanner HG. (2020). GEARing smart environments for pediatric motor rehabilitation. Journal of NeuroEngineering and Rehabilitation. 17(1), 16. DOI: https://doi.org/10.1186/s12984-020-0647-0.

    Langley J, Hussain S, Flores JJ, Bennett IJ, Hu X (2020) Characterization of age-related microstructural changes in locus coeruleus and substantia nigra pars compacta. Neurobiology of Aging Volume 87, pages 89–97. https://doi.org/10.1016/j.neurobiolaging.2019.11.016

    Li K, Sweeney JA, Hu XP (2020) Context-dependent dynamic functional connectivity alteration of lateral occipital cortex in schizophrenia. Schizophrenia Research (in press). https://doi.org/10.1016/j.schres.2020.03.020.

    Liao J, Way G, and Madahar V. (2020) Target Virus or Target Ourselves for COVID-19 Drugs Discovery?―Lessons learned from anti-influenza virus therapies. Med Drug Discov. Mar;5:100037.  doi: 10.1016/j.medidd.2020.100037.

    Liu E, Guo J, Simon AB, Haist F, Dubowitz DJ, Buxton RB. (2020) The potential for gas-free measurements of absolute oxygen metabolism during both baseline and activation states in the human brain. NeuroImage. 207:116342. doi: 10.1016/j.neuroimage.2019.116342.

    Liu Y, Hanley T, Chen H, Long SR, Gambhir SS, Cheng Z, Wu JC, Fakhri EG, Anvari*, Zaman* RT. (2020). Non-invasive photoacoustic imaging of in vivo mice with erythrocyte derived optical nanoparticles to detect CAD/MI, Scientific Reports, 10, 5982 (*co-corresponding author). https://www.nature.com/articles/s41598-020-62868-1.

    Lu T, Anvari B. (2020) Characterization of the viscoelastic properties of ovarian cancer cells membranes by optical tweezers and quantitative phase imaging. Frontiers in Physics, 8, 582956. https://escholarship.org/uc/item/1nb2s5gf.

    Mitchell BP, Hsu RV, Medrano MA, Zewede NT, Narkhede YB, Palermo G.† (2020) Spontaneous embedding of DNA mismatches within the RNA:DNA hybrid in CRISPR-Cas9. Front. Mol. Biosci. vol. 7, pages 39. 

    Nierzwicki, Ł., Arantes, P. R., Saha, A., & Palermo, G. (2020). Establishing the allosteric mechanism in CRISPR‐Cas9. WIREs Computational Molecular Science, 11(3). DOI: https://doi.org/10.1002/wcms.1503.

    Palermo, Y. Sugita, W. Wriggers and R. E. Amaro. Faces of Contemporary CryoEM Information and Modeling. J. Chem. inf. Model.2020, 60, 2407-2409.

    Poronik YM, Baryshnikov GV, Deperasińska I, Espinoza EM, Clark JA, Ågren H, Gryko DT, Vullev VI. (2020) Deciphering the Unusual Fluorescence in Weakly Coupled bis-Nitro-pyrrolo[3, 2-b]pyrroles. Communications Chemistry. 3, 190. DOI: 10.1038/s42004-020-00434-6.

    Rybicka-Jasińska K, Vullev VI (2020) Molecular electrets – Why do dipoles matter for charge transfer and excited-state dynamics?, J. Photochem. Photobiol. A, 401, 112779. DOI: 10.1016/j.jphotochem.2020.112779.

    Saha, A., Arantes, P. R., Hsu, R. V., Narkhede, Y. B., Jinek, M., & Palermo, G. (2020). Molecular dynamics reveals a DNA-induced dynamic switch triggering activation of CRISPR-CAS12A. Journal of Chemical Information and Modeling, 60(12), 6427–6437.
    DOI: https://doi.org/10.1021/acs.jcim.0c00929.

    Silva CP, Silva GTM, Costa TdeS, Carneiro VMT, Siddique F, Aquino AJA, Freitas AA, Clark JA, Espinoza EM, Vullev VI, Quina FH (2020) Chromophores inspired by the colors of fruit, flowers and wine. Pure Appl. Chem., 92, 255-263. DOI: 10.1515/pac-2019-0226.

    Skonieczny K, Espinoza EM, Derr JB, Morales M, Clinton JM, Xia B, Vullev VI (2020) Biomimetic and bioinspired molecular electrets. How to make them and why does the established peptide chemistry not always work?, Pure Appl. Chem., 92, 275-299. DOI: 10.1515/pac-2019-0111.

    Tang JC, Vankayala R, Mac JT, Anvari B. (2020). RBC-derived optical nanoparticles remain stable after a freeze-thaw cycle. Langmuir, 36, 10003-10011. https://pubs.acs.org/doi/10.1021/acs.langmuir.0c00637.

    Thorwall S, Schwartz C, Chartron JW, Wheeldon I (2020) Stress-tolerant non-conventional microbes enable next-generation chemical biosynthesis. Nature Chemical Biology Vol. 16, pages 113–121.

    Vankayala R,  Bahena E., Guerrero Y., Singh SP, Murali MK, Kundra V, Anvari B. (2020). Virus-mimicking nanoparticles for targeted near infrared fluorescence imaging of intraperitoneal ovarian tumors: an animal model study. Annals of Biomedical Engineering, 49, 548-559. https://link.springer.com/article/10.1007%2Fs10439-020-02589-8.

    Wang Y, Liu X, Way G,Madarha V, Zhou Q,Yang D, Liao J, Wang M. (2020). An in vitro Förster resonance energy transfer-based high-throughput screening assay identifies inhibitors of SUMOylation E2 Ubc9. Acta Pharmacologica Sinica, 0:1–10; https://doi.org/10.1038/s41401-020-0405-7.

    Way G, Xiong Z, Wang GJ, Dai HC, Zheng SS, García-Sastre A, Liao J. (2020) A novel SUMOylation site in the influenza a virus NS1 protein identified with a highly sensitive FRET assay. J Biotechnol., 10;323:121-127. doi: 10.1016/j.jbiotec.2020.08.009.

    Xaypraseuth A, Madahar V, Liao J. (2020) Development of Quantitative Förster Resonance Energy Transfer (qFRET) based High Throughput (HTS) screening for PD-1/PD-L1 immune-checkpoint assay. UC Riverside Undergraduate Research Journal, 14(1). http://dx.doi.org/10.5070/RJ5141049302.

    Yeung R, Zhu X, Gee T, Gheen B, Jassby D, Rodgers VGJ (2020) Enhanced protein separation by preferential adsorption during electroultrafiltration using PVA-CNT composite membranes, PLOS Onehttps://doi.org/10.1371/journal.pone.0228973.

    Zhang C, Wen TH, Razak KA, Lin J, Xu C, Seo C, Villafana E, Jimenez H, Liu H (2020) Magnesium-based Biodegradable Microelectrodes for Neural Recording. Materials Science and Engineering: C Vol. 110, pages 110614.

    Zhang C, Lin J, Nguyen N, Guo Y, Xu C, Seo C, Villafana E, Jimenez H, Yang C, Guan R, Liu H (2020) Antimicrobial Bioresorbable Mg-Zn-Ca Alloy for Bone Repair in a Comparison Study with Mg-Zn-Sr Alloy and Pure Mg. ACS Biomaterials Science and Engineering, Vol.6, pages 517-538. 

    Zhang T, Li X, Jiang X, Ge F, Zhang S, Zhao L, Liu H, Huang Y, Wang X, Yang J, Guo L, Hu X, Liu T (2020). Cortical 3-hinges could serve as hubs in cortico-cortical connective network. Brain Imaging and Behavior https://doi.org/10.1007/s11682-019-00204-6.

    Zheng L, Wang O, Hao S, Ye C, Liu M, Xia M, Sabo AN, Markovic L, Stearns F, Kanov L, Sylvester KG, Widen E, McElhinney DB, Zhang W, Liao J, Ling XB. 2020. Development of an early-warning system for high-risk patients for suicide attempt using deep learning and electronic health records. Transl Psychiatry. Feb 20;10(1):72, https://doi.org/10.1038/s41398-020-0684-2.

  • 2019
    • Borisek J, Saltalamacchia A, Galli A, Palermo G,Molteni E, Malcovati L, Magistrato A (2019) Disclosing the Impact of Carcinogenic SF3b Mutations on Pre-mRNA Recognition Via All-Atom Simulations. Biomolecules, 9, 633.

    • Fan AP, Khalighi MM, Guo J, Yosuke I, Rosenberg J , Wardak M, Park JH, Shen B, Holley D, Gandhi H, Haywood T, Singh P, Steinberg GK, Chin FT, Zaharchuk G. Identifying Hypoperfusion in Moyamoya Disease With Arterial Spin Labeling and an [15O]-Water Positron Emission Tomography/Magnetic Resonance Imaging Normative Database. Stroke. 2019. 50(2):373-380. doi: 10.1161/STROKEAHA.118.023426.

    • Hanley T, Yin R, Mac JT, Tan W, Anvari  B (2019) Functionalized erythrocyte-derived optical nanoparticles to target ephrin-B2 ligands Journal of Biomedical Optics, 24, 085002 (9 pages) [Featured on the Cover of August 2019 issue].

    • Kim S, Ico G, Bai Y, Yang S, Lee J, Yin Y, Myung N, Nam J. (2019). Utilization of a magnetic field-driven microscopic motion for piezoelectric energy harvesting. NANOSCALE (in press) http://dx.doi.org/10.1039/C9NR04722K

    • McKenzie BA, Robles-Najar J, Duong E, Brisk P,  Grover WH.  Chronoprints: Identifying samples by visualizing how they change over space and timeACS Central Science, in press.  doi: 10.1021/acscentsci.8b00860

    • Sina Faezi, Sujit Rokka Chhetri, Arnav Vaibhav Malawade, John Charles Chaput, William Grover, Philip Brisk, and Mohammad Abdullah Al Faruque.  Oligo-Snoop: A Non-Invasive Side Channel Attack Against DNA Synthesis Machines. Network and Distributed Systems Security (NDSS) Symposium, San Diego, CA, 2019.  https://www.ndss-symposium.org/ndss-paper/oligo-snoop-a-non-invasive-side-channel-attack-against-dna-synthesis-machines/

    • Gries CM, Mohan RR, Morikis D, Lo DD (2019) Crosslinked flagella as a stabilized vaccine adjuvant scaffold. BMC Biotechnology, in press.

    • Guo J, Gong E, Fan AP, Goubran M, Khalighi MM, Zaharchuk G. Predicting 15O-Water PET Cerebral Blood Flow Maps from Multi-contrast MRI Using a Deep Convolutional Neural Network with Evaluation of Training Cohort Bias. JCBFM. 2019. In press.

    • Hale CS, Bhakta HC, Jonak CR, Yonan JM, Binder DK, Grover WH, Rodgers VGJ (2019) Differential densimetry: a method for determining ultra-low fluid flux and tissue permeability, AIP Advances, 9, 095063.

    • Hale CS, McBride DW, Batarseh R, Hughey J, Vang K, Rodgers VGJ (2019) Development and Applications of a Concentrating Membrane Osmometer for Colloid Solutions, Review of Scientific Instruments, 90 (3), 034102.

    • Harrison RES, Morikis D (2019) Molecular Mechanisms of Macular Degeneration Associated with the Complement Factor H Y402H Mutation. Biophys J.,116(2):215-226. doi: 10.1016/j.bpj.2018.12.007.

    • Howell B, Ahn M, Shi Y, Godfrey JR, Hu X, Zhu H, Styner MA, and Sanchez MM. Disentangling the effects of early caregiving experience and heritable factors on brain white matter development in rhesus monkeys. NeuroImage (in press).

    • Horner C, Maldonado M, Tai Y, Rony RMIK, Nam J. Spatially regulated multi-phenotypic differentiation of stem cells in 3D via engineered mechanical gradient. ACS Applied Materials & Interfaces (in press) https://doi.org/10.1021/acsami.9b17266

    • Langley J, He N, Huddleston DE, Chen S, Yan F, Crosson B, Factor S, and Hu X. Reproducible detection of nigral iron deposition in two Parkinson’s disease cohorts. Movement Disord 34(3): 416-19, 2019.

    • Li Z, Lei K, Lynch ME, Coles CD, and Hu X. Longitudinal changes in amygdala connectivity in adolescents prenatally exposed to cocaine. Drug and Alcohol Dependence (in press).

    • Lim T, Ico G, Jung K, Bozhilov KN, Nam J, Martinez-Morales, AA. (2018). Crystal growth and piezoelectric characterization of mechanically stable ZnO nanostructure arrays. CRYSTENGCOMM, 20(38). http://dx.doi.org/10.1039/c8ce00799c

    • Michel M, Beck D, Block N, Brown R, Carmel D, Chirimuuta M, Chun M, Cleeremans A, Martinez-Conde S, Dehaene S, Fleming SM, Frith C, Haggard P, He B, Heyes C, Goodale MA, Irvine L, Kawato M, Kentridge B, King JR, Knight RT, Kouider S, Lamme V, Lamy D, Lau H, Laureys S, LeDoux J, Lin YT, Liu K, Macknik S, Mashour GA, Melloni L, Miracchi L, Mylopoulos M, Naccache L, Owen A, Passingham RE, Pessoa L, Peters MAK, Rahnev D, Ro T, Rosenthal D, Sasaki Y, Sergent C, Solovey G, Schiff ND, Seth A, Tallon-Baudry C, Tamietto M, Tong F, van Gaal S, Vlassova A, Watanabe T, Weisberg J, Yan K, and Yoshida M. Opportunities and challenges for a maturing science of consciousness. Nature Human Behaviour (2019). DOI:10.1038/s41562-019-0531-8

    • Morgan JT, Robbins AK, Mateson AB, Sawamoto K, Tomatsu S, Gray DR, Gleghorn JP, Barthold JS. Regional Variation in Androgen Receptor Expression and Biomechanical Properties May Contribute to Cryptorchidism Susceptibility in the LE/orl Rat. Frontiers in Endocrinology (2019); 9; 738. DOI: 10.3389/fendo.2018.00738 

    • Morgan JT*, Shirazi J*, Comber EM, Eschenburg C, Gleghorn JP (2019) Fabrication of centimeter-scale and geometrically arbitrary vascular networks using in vitro self-assembly. Biomaterials (2019); 189;37-47. DOI: 10.1016/j.biomaterials.2018.10.021

    • Palermo G.Dissecting Structure and Function of RNA:DNA Hybrids. Chem 2019, 5, 1364-1366.

    • Palermo G. Structure and Dynamics of the CRISPR-Cas9 Catalytic Complex. J. Chem. Inf. Model. (2019), In press. (Journal Cover Art.) 

    • Palermo G, Ricci CG, McCammon JA. The invisible dance of CRISPR-Cas9. Molecular simulations unveil the molecular side of the gene-editing revolution. Physics Today (2019) 72, 4, 30.

    • Palermo G, Casalino L, Magistrato A, McCammon JA. Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations. J. Struct. Biol., 2019. In press. (Journal Cover Art.)  

    • Potter J,  Brisk P, Grover WH.  Using printer ink color to control the behavior of paper microfluidics. Lab on a Chip, in press.  https://pubs.rsc.org/en/content/articlelanding/2019/lc/c9lc00083f

    • Ricci CG, Chen JS, Miao Y , Jinek M, Doudna JA, McCammon JA, Palermo G. Deciphering Off-target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics. ACS Cent. Sci. (2019), 5, 651-662.

    • Rosenberg EM Jr, Harrison RES, Tsou LK, Drucker N, Humphries B, Rajasekaran D, Luker KE, Wu CH, Song JS, Wang CJ, Murphy JW, Cheng YC, Shia KS, Luker GD, Morikis D, Lolis EJ (2019) Characterization, Dynamics, and Mechanism of CXCR4 Antagonists on a Constitutively Active Mutant. Cell Chem Biol. pii: S2451-9456(19)30034-0. doi: 10.1016/j.chembiol.2019.01.012.

    • Shirazi J*, Morgan JT*, Comber EC, Gleghorn JP. Generation and morphological quantification of large scale, three-dimensional, self-assembled vascular networks. MethodsX (2019). 6:1907-1918 DOI: 10.1016/j.mex.2019.08.006

    • Stolyarova, A, Rakhshan, M, Hart, EE , O’Dell, TJ , Peters, MAK, Lau, H, Soltani, A, Izquierdo, A (2019). Contributions of anterior cingulate cortex and basolateral amygdala to decision confidence and learning under uncertainty. Nature Communications, 10(1), 1-14.

    • Syed MA, Yang Z, Rangaprakash D, Hu X, Dretsch MN, Katz JS, Denney TD, and Deshpande G. DisConICA: A software package for assessing reproducibility of brain networks and their discriminability across disorders. Neuroinformatics, 2019 (in press).

    • Thamm T, Guo J, Rosenberg J, Liang T, Marks MP, Christensen S, Do HM, Kemp SM, Adair E, Eyngorn I, Mlynash M, Jovin TG, Keogh BP, Chen J, Lansberg MG , Albers GW, Zaharchuk G, on behalf of the iCAS Study Investigators. Contralateral Hemispheric Cerebral Blood Flow Measured with Arterial Spin Labeling Can Predict Outcome in Acute Stroke. Stroke. 2019. In press.

    • Terry TL, Givens BE, Rodgers VGJ, Salem AK (2019) Tunable properties of poly-DL-lactide-monomethoxypolyethylene glycol porous microparticles for sustained release of polyethylenimine-DNA polyplexes, AAPS PharmSciTech, DOI: 10.1208/s12249-018-1215-9.

    • Vankayala* R, Mac* JT, Burns JM, Dunn E, Carroll S, Bahena EM, Patel DK, Griffey S, and Anvari B. Biodistribution and toxicological evaluation of micron- and nano-sized erythrocyte-derived optical particles in healthy Swiss Webster miceBiomaterials Science, 2123-2133 (2019) (*equally contributed). 

    • Vanni S,Riccardi L, Palermo G, De Vivo M (2019)  Structure and dynamics of the acyl chains in the membrane trafficking and enzymatic processing of lipids. Acc. Chem. Res. 2019, In Press.

    • Wang J, Zhang N, Chen J, Rodgers VGJ, Brisk P, Grover WH (2019) Finding the optimal design of a passive microfluidic mixer, Lab on a Chip, DOI: 10.1039/C9LC00546C

    • Wang L, Li K, Chen X, and Hu X. Application of convolutional recurrent neural network for individual recognition based on resting state fMRI data. Frontiers in Neuroscience (in press)

    • Westphal, Andrew J; Chow, Tiffany E; Ngoy, Corey; Zuo, Xiaoye; Liao, Vivian; Storozuk, Laryssa A; Peters, Megan A K; Wu, Allan D; Rissman, Jesse (2019). Anodal Transcranial Direct Current Stimulation to the Left Rostrolateral Prefrontal Cortex Selectively Improves Source Memory Retrieval. Journal of Cognitive Neuroscience, 1–12.

    • Wodak SJ et al. Allostery in its many disguises: from theory to applications. Structure (2019) 4, 566-578.

    • Yosuke I, Thamm T, Guo J, Khalighi MM, Wardak M, Holley D, Gandhi H, Park JH, Shen B, Steinberg GK, Chin FT, Zaharchuk G, Fan AP. Simultaneous phase-contrast MRI and PET for noninvasive quantification of cerebral blood flow and reactivity in healthy subjects and patients with cerebrovascular disease. J Magn Res. Imag. 2019 May 1. doi: 10.1002/jmri.26773.

  • 2018
    • Burns JM, Jia W, Nelson JS, Majaron B, Anvari B (2018) Photothermal treatment of port wine statins using erythrocyte-derived particles doped with indocyanine green: a theoretical study  Journal of Biomedical Optics, 23, 23, 121616, (10 pages).
    • Burns, JM, Vankayala R, Mac JT, Anvari B (2018) Erythrocyte-derived theranostic nanoplatforms for infrared fluorescence imaging and photodestruction of tumors ACS Applied Materials & Interfaces, 10, 27621-27630
       
    • Michel M, Fleming SM, Lau H, Lee ALF, Martinez-Conde S, Passingham RE, Peters MAK, Rahnev D, Sergent C, and Liu K. An informal internet survey on the current state of Consciousness Science. Frontiers in Psychology: Consciousness Research (2018).  DOI:10.3389/fpsyg.2018.02134
    • Peters MAK, Zhang LQ*, and Shams L. The material-weight illusion is a Bayes-optimal percept under competing density priors. PeerJ (2018).[*denotes equal contribution] DOI: 10.7717/peerj.5760
    • Knotts JD, Lau H, and Peters MAK. Continuous flash suppression and monocular pattern masking impact subjective awareness similarly. Attention, Percep- tion, & Psychophysics (2018). DOI: 10.3758/s13414-018-1578-8
    • Ruby E, Maniscalco B, and, Peters MAK. On a ‘failed’ attempt to manip- ulate conscious perception with transcranial magnetic stimulation to prefrontal cortex.  Consciousness & Cognition (2018). DOI: 10.1016/j.concog.2018.04.009
    • Zewde N, Mohan RR, Morikis D. Immunophysical evaluation of the initiating step in the formation of the membrane attack complex. Frontiers in Physics (2018); 6;130 (17 pages). DOI: 10.3389/fphy.2018.00130.
    • Tang JC, Partono A, and Anvari B. Near-Infrared-Fluorescent Erythrocyte-Mimicking Particles: Optical and Physical Characteristics. IEEE Transactions on Biomedical Engineering (2018); 99. DOI: 10.1109/TBME.2018.2866368
    • Morgan JT*, Stewart WG*, McKee RM, Gleghorn JP. The mechanosensitive ion channel TRPV4 is a regulator of lung development and pulmonary vasculature stabilization. Cellular and Molecular Bioengineering (2018); 11(5); 309-320. DOI: 10.1007/s12195-018-0538-7
    • Melamed JR, Morgan JT, Gleghorn JP, Sims-Mourtada J, Day ES. Investigating the role of Hedgehog/GLI1 signaling in glioblastoma cell response to temozolomide. Oncotarget (2018); 9; 27000-27015. PMID: 29930746. DOI: 10.18632/oncotarget.25467
    • Thomasy SM, Raghunathan VK, Miyagi H, Evashenk AT, Sermeno JC, Tripp GK, Morgan JT, Murphy CJ. Latrunculin B and substratum stiffness regulate corneal fibroblast to myofibroblast transformation. Exp Eye Res (2018); 170;101-107. PMID: 29421383 DOI:10.1016/j.exer.2018.02.003
    • Mac JT, Vankayala R, Patel DK, Wueste S, and Anvari B. Erythrocyte-derived optical nanoprobes doped with indocyanine green-bound albumin: material characteristics and evaluation for cancer cell imaging. ACS Biomaterials Science & Engineering (2018); 3055-3062. DOI: 10.1021/acsbiomaterials.8b00621
    • Palermo G,  Chen JS, Ricci CG, Rivalta I, Jinek M, Batista VS, Doudna JA, McCammon JA. Key role of the REC lobe during CRISPR-Cas9 activation by “sensing”, “regulating” and “locking” the catalytic HNH domain. Quarterly Review of Biophysics (2018); 51; e9. DOI: 10.1017/S0033583518000070
    • Casalino L, Palermo G,  Spinello A, U. Rothlisberger U, Magistrato A. All-Atom Simulations Disentangle the Functional Dynamics Underlying Gene Maturation in the Intron Lariat Spliceosome. Proc Natl Acad Sci USA (2018); 115; 6584-6589.DOI: 10.1073/pnas.1802963115
    • Buetefisch C, Revill KP, Haut M, Kowalski G, Wischnewski M, Pifer M, Belagaje S, Nahab F, Cobia D, Hu X, Drake D and Hobbs G. Abnormally reduced primary motor cortex output is related to impaired hand function in chronic stroke. J Neurophys (2018).DOI: 10.1152/jn.00715.2017
    • Meng Y, Hu X, Zhang X, and Bachevalier J. Diffusion tensor imaging reveals microstructural alterations in corpus callosum and associated transcallosal fiber tracts in adult macaques with neonatal hippocampal lesions. Hippocampus (2018).DOI: 10.1002/hipo.23006
    • Huddleston DE, Langley J, Dusek P, He N, Faraco CC, Crosson B, Factor S and Hu X. Imaging Parkinsonian Pathology in the Substantia Nigra with MRI. Curr Radiol Rep (2018); 6: 15.DOI: 10.1007/s40134-018-0272-x
    • Sulzer D, Cassidy C, Horga G, Kang U, Fahn S, Casella L, Pezzoli G, Langley J, Hu X, Zucca F, Isaias I, and Zecca L. Neuromelanin detection by magnetic resonance imaging (MRI) and its promise as a biomarker for Parkinson’s disease. NPJ Parkinson’s Disease (2018); 4:11;.DOI: 10.1038/s41531-018-0047-3
    • Chen S, and Hu X. Individual identification using functional brain fingerprint detected by recurrent neural network. Brain Connect 8(4): 197-204, 2018. DOI: 10.1089/brain.2017.0561
    • Rangaprakash D, Wu G-R, Marinazzo D, Hu X, and Deshpande G. Parametrized hemodynamic response function data of healthy individuals obtained from resting-state functional MRI in a 7T MRI Scanner. Data in Brief (2018).DOI: 10.1016/j.dib.2018.01.003
    • Rangaprakash D, Wu G-R, Marinazzo D, Hu X, and Deshpande G. Hemodynamic response function (HRF) variability confounds resting-state fMRI functional connectivity. Magn Reson Med (2018).DOI: 10.1002/mrm.27146
    • Hale CS, Ornelas DN, Yang JS, Chang L, Vang K, Batarseh RN, Ozaki N, Rodgers VGJ (2018) Interrogating the Osmotic Pressure of Self-Crowded Bovine Serum Albumin Solutions: Implications of Specific Monovalent Anion Effects Relative to the Hofmeister Series, The Journal of Physical Chemistry B 2018 122 (33), 8037-8046. DOI: 10.1021/acs.jpcb.8b0700.
    • Horner C, Hirota K, Liu J, Maldonado, M Park, BH, Nam J. Magnitude-Dependent and Inversely-Related Osteogenic/Chondrogenic Differentiation of Human Mesenchymal Stem Cells by Dynamic Compressive Strain. Journal of Tissue Engineering and Regenerative Medicine (2018); 12(2); e637-e647. DOI: 10.1002/term.2332
    • Brunelle A, Horner C, Low K, Ico G, Nam J. Electrospun thermosensitive hydrogel scaffold for enhanced chondrogenesis of human mesenchymal stem cells. Acta Biomaterialia (2018); 66; 166-176. DOI: 10.1016/j.actbio.2017.11.020.
    • Co G, Myung A, Kim B, Myung N.V, Nam J. Transformative piezoelectric enhancement of P(VDF-TrFE) synergistically driven by nanoscale dimensional reduction and thermal treatment. Nanoscale (2018); 10(6); 2894-2901 DOI:10.1039/C7NR08296G
    • Burns JM, Schaefer E, and Anvari B. Near infrared spatial frequency domain fluorescence imaging of tumor phantoms containing erythrocyte-derived optical nanoplatformsProceedings Volume 10506, Nanoscale Imaging, Sensing, and Actuation for Biomedical Applications XV (2018). DOI:10.1117/12.2286550
    • Co G, Myung A, Kim B, Myung N.V, Nam J. Transformative piezoelectric enhancement of P(VDF-TrFE) synergistically driven by nanoscale dimensional reduction and thermal treatment. Nanoscale (2018); 10(6); 2894-2901 DOI:10.1039/C7NR08296G
    • Erudaitius D, Mantooth J, Huang A, Soliman J, Doskey C, Buettner GR, Rodgers VGJ. Cell-Specific Intracellular Hydrogen Peroxide Concentration: Relevance in Cancer Cell Susceptibility during Ascorbate Therapy. Free Rad. Biol. Med (2018).DOI:10.1016/j.freeradbiomed.2018.03.044
    • Mitchell B, Hu X. The Neurotoxic Effects of Cycads and Metals: A Review. UCR Undergraduate Research Journal XII:65-73 (2018).
    • Mohan RR, Wilson M, Gorham RD Jr, Harrison RES, Morikis VA, Kieslich CA, Orr AA, Coley AV, Tamamis P, Morikis D. Virtual screening of chemical compounds for discovery of complement C3 ligands. ACS Omega (2018); 3; 6427–6438. DOI: 10.1021/acsomega.8b00606
    • Winicki NM, Harrison RES, Perry JP, Morikis D. Identification of Targetable Surfaces of Cks1 for Development of New Cancer Therapeutics. UCR Undergraduate Research Journal XII:111-119 (2018).
    • Ngo-Duc T-T, Plank JM, Chen G, Harrison RES, Morikis D, Liu H, Haberer ED. M13 bacteriophage spheroids as scaffolds for directed synthesis of spiky gold nanostructures. Nanoscale, View Online (2018). DOI: 10.1039/c8nr03229g.
    • Nwangwu M, Madahar V, Liao J. Determination of Immune Signal–Receptors, PD-1 and PD-L1, Interactions in Solution using qFRET Technology. UCR Undergraduate Research Journal XII:89-95 (2018).
    • Ryu HG, Mayther MF, Tamayo J, Azarias C, Espinoza EM, Banasiewicz M, Łukasiewicz ŁG, Poronik YM, Jeżewski A, Clark J, Derr JB, Ahn KH, Gryko DT, Jacquemin D, Vullev VI. Bidirectional Solvatofluorochromism of a Pyrrolo[3,2-b]pyrrole–Diketopyrrolopyrrole Hybrid. J. Phys. Chem. C (2018). DOI: 10.1021/acs.jpcc.7b11194.
    • Vankayala R, Corber S, Mac J, Rao M, Shafie M, and Anvari B. Erythrocyte-derived nanoparticles as a theranostic agent for near infrared fluorescence imaging and thrombolysis of blood clots. Macormolecular Bioscience (2018).  DOI: 10.1002/mabi.201700379.Zewde N, Morikis D. A Computational Model for the Evaluation of Complement System Regulation under Homeostasis, Disease, and Drug Intervention. PLOS ONE (2018); 13(6); e0198644 (28 pages, 177 pages supplementary information). doi.org/10.1371/journal.pone.0198644.
  • 2017
    • Li X, Chen H, Zhang T, Yu X, Jiang X, Li K, Li L, Razavi MJ, Wang X, Hu XT, Han J, Guo L, Hu X (co-corresponding author), and Liu T. Commonly-preserved and species- specific gyral folding patterns across primate brains. Brain Struct Funct (2017); 222(5); 2127- 2141.DOI: 10.1002/smll.201700151
    • Nalbandian MJ, Zhang M, Sanchez J, Nam J, Cwiertny DM, Myung NV. Mesoporous θ-Alumina/Hematite (θ-Al2O3/Fe2O3) Composite Nanofibers for Heavy Metal Removal. Science of Advanced Materials (2017); 9(1); 22-29.DOI: 10.1166/sam.2017.3013
    • Low K, Wong L, Maldonado M, Manjunath C, Horner C, Perez M, Myung VN, Nam J. Physicoelectrochemical characterization of pluripotent stem cells during self‐renewal or differentiation by a multi‐modal monitoring system. Stem Cell Reports (2017); 8; 1-11. *: co-first authorDOI: 10.1016/j.stemcr.2017.03.021
    • Shirazi P, Ico G, Ma M, Anderson C, Kim BS, Nam J, Myung NV. Size-dependent piezoelectric properties of electrospun BaTiO3 for enhanced energy harvesting. Advanced Sustainable Systems (2017); 1(11); 1700091.doi: 10.1002/adsu.201700091
    • Maldonado M, Luu R, Ico G, Ospina A, Myung D, Shih H, Nam J. Lineage- and developmental stage-specific mechano-modulation of induced pluripotent stem cell differentiation. Stem Cell Research & Therapy (2017); 8; 216.doi: 10.1186/s13287-017-0667-2
    • Cipriano AF, Lin J, Miller C, Lin A, Cortez Alcaraz MC, Soria P, Liu H. Anodization of magnesium for biomedical applications – Processing, characterization, degradation and cytocompatibility. Acta Biomaterialia (2017). DOI: 10.1016/j.actbio.2017.08.017.
    • Wang Y, David O, Hu X, and Deshpande G. Can Patel's τ accurately estimate directionality of connections in brain networks from fMRI?. Magnetic resonance in medicine (2017). DOI: 10.1002/mrm.26583.
    • Zewde N, Morikis D. A Computational Model for the Evaluation of Complement System Regulation under Homeostasis, Disease, and Drug Intervention. bioRxiv (2017). DOI: 10.1101/225029.
    • Syed M, Yang Z, Hu X, and Deshpande G. Investigating brain connectomic alterations in autism using the reproducibility of independent components derived from resting state functional MRI data. Frontiers in Neurosci (2017). DOI: 10.3389/fnins.2017.00459.
    • Ge F, Li X, Razavi MJ, Chen H, Zhang T, Guo L, Hu X, Wang X, and Liu T. Denser growing fiber connections induce 3-hinge gyral folding. Cerebral Cortex (2017). DOI: 10.1093/cercor/bhx227.
    • Razavi MJ, Zhang T, Chen H, Li Y, Platt S, Zhao Y, Guo L, Hu X, Wang X, Liu T. Radial structure scaffolds convolution patterns of developing cerebral cortex. Frontiers in Computational Neuroscience (2017); 11; 76. DOI: 10.3389/fncom.2017.00076.
    • Zhang W, Jiang X, Zhang S, Howell BR, Zhao Y, Zhang T, Guo L, Sanchez MM, Hu X (co-corresponding author), and Liu T. Connectome-scale functional intrinsic connectivity networks in macaques. Neurosci (2017)DOI: 10.1016/j.neuroscience.2017.08.022.
    • Jin CF, Jia H, Lanka P, Rangaprakash, Li L; Liu T, Hu X and Deshpande G. Dynamic brain connectivity is a better predictor of PTSD than static connectivity. Human Brain Mapp (2017). DOI: 10.1002/hbm.23676.
    • Li Z, Prudent CN, Hess EJ, Stilla R, Sathian K, Jinnah HA and Hu X. Alterations of resting-state fMRI measurements in individuals with cervical dystonia. Human Brain Mapp (2017); 38(8); 4098-4108. DOI: 10.1002/hbm.23651.
    • Deshpande G, Rangaprakash D, Oeding L, Cichocki A, and Hu X. A new generation of brain-computer interfaces driven by discovery of latent EEG-fMRI linkages using tensor decomposition. Frontiers in Neurosci (2017); 11; 246. DOI: 10.3389/fnins.2017.00246.
    • Zhang X, Zhou Z, Chen SY, Chen S, Li R and Hu X. MR fingerprinting reconstruction with Kalman filter. Magn Reson imag (2017). DOI: 10.1016/j.mri.2017.04.004.
    • Zhang T, Razavi MJ, Chen Hu, Li Y, Li X, Li L, Guo L, Hu X, Liu T, and Wang X. Mechanisms of gyral convolution in circumferential direction of primate. J Comput Neurosci (2017); 42(3); 217-229. DOI: 10.1007/s10827-017-0637-9.
    • Huddleston DE, Langley J, Sedlacik J, Boelmans K, Factor SA, and Hu X. In vivo detection of lateral–ventral tier nigral degeneration in Parkinson’s disease. Human Brain Mapp (2017); 38(5); 2627-2634. DOI: 10.1002/hbm.23547.
    • Shi Y, Budin F, Yapuncich E, Rumple A, Young JT, Payne C, Zhang X, Hu X, Godfrey J. Howell B, Sanchez MM, and Styner MA. UNC-Emory infant atlases for macaque brain image analysis: postnatal brain development through 12 months. Frontiers in Neurosci (2017); 10; 617. DOI: 10.3389/fnins.2016.00617.
    • Wang Z, David O, Hu X and Deshpande G. Can Patel’s τ accurately estimate directionality of connections in brain networks from fMRI? Magn Reson Med (2017). DOI: 10.1002/mrm.26583.
    • Langley J, Huddleston DE, Sedlacik J, Boelmans K, and Hu X. Parkinson’s disease related increase of T2-weighted hypointensity in substantia nigra pars compacta. *Movement Disorder (2017); 32(3); 441-449. DOI: 10.1002/mds.26883.
    • Zhang J, Ji B, Hu J, Li L, Li Z, Wang J and Hu X. Differential impairment of thalamocortical structural connectivity in amyotrophic lateral sclerosis. CNS Neuroscience & Therapeutics (2017); 232; 155-161. DOI: 10.1111/cns.12658.
    • Gray V, Xia P, Huang Z, Moses E, Fast E, Fishman DA, Vullev VI, Abrahamsson M, Moth-Poulsena K, Tang ML CdS/ZnS Core–Shell Nanocrystal Photosensitizers for Visible to UV Upconversion. Chemical Science (2017); 8; 5488–5496. DOI: 10.1039/c7sc01610g.
    • Guerrero Y, Singh SP, Mai T, Murali RK, Tanikella L, Zahedi A, Kundra V, Anvari B. Optical characteristics and tumor imaging capabilities of near infrared dyes in free and nano-encapsulated formulations comprised of viral capsid. ACS Applied Materials & Interfaces (2017); 9; 19601-19611. DOI: 10.1021/acsami.7b03373.
    • Gao A, Xu W, Ponce de León Y, Bai Y, Gong M, Xie K, Park BH, Yin Y. Controllable Fabrication of Au Nanocups by Confined-Space Thermal Dewetting for OCT Imaging. Adv. Mater (2017); 29; 1701070. DOI: 10.1002/adma.201701070.
    • Harrison RES, Mohan RR, Gorham RD Jr, Kieslich CA, Morikis D. AESOP: A Python Library for Investigating Electrostatics in Protein Interactions. Biophysical Journal (2017);112;1761-1766. DOI: 10.1016/j.bpj.2017.04.005.
    • Gaieb Z, Morikis D. Conformational heterogeneity in CCR7 undergoes transitions to specific states upon ligand binding. Journal of Molecular Graphics and Modelling (2017); 74:352-358.Pubmed Link. DOI: 10.1016/j.jmgm.2017.04.012 .
    • Larsen-Clinton JM, Espinoza EM, Mayther M, Clark J, Tao C, Bao D, Larino CM, Wurch M, Lara S, Vullev VI. Fluorinated Aminoanthranilamides: Non-native Amino Acids for Bringing Proteomic Approaches to Charge-Transfer Systems. Physical Chemistry Chemical Physics (2017); 19; 7871-7876.Pubmed Link. DOI: 10.1039/C7CP00432J .
    • López-Perrote A, Harrison RES, Subías M, Alcorlo M, Rodríguez de Córdoba S, Morikis D, Llorca O. Ionic tethering contributes to the conformational stability and function of complement C3b. Molecular Immunology (2017); 85;137-147. Pubmed Link. DOI:10.1016/j.molimm.2016.12.015.
    • Erudaitius D, Huang A, Kazmi S, Buettner GR, Rodgers VGJ. Peroxiporin Expression Is an Important Factor for Cancer Cell Susceptibility to Therapeutic H2O2: Implications for Pharmacological Ascorbate Therapy. PLoS ONE (2017); 12(1); e0170442. Pubmed Link. DOI:10.1371/journal.pone.0170442.
    • Gaieb Z, Morikis D. Detection of side chain rearrangements mediating the motions of transmembrane helices in molecular dynamics simulations of G protein-coupled receptors. Computational and Structural Biotechnology Journal (2017); 15:131-137. PMC Link. DOI:10.1016/j.csbj.2017.01.001.
    • Tong MQ, Hasan MM, Lee SS, Md Rezuanul Haque, Kim DH., Islam MS, Adams ME, and Park BH. OCT intensity and phase fluctuations correlated with activity-dependent neuronal calcium dynamics in the Drosophila CNS invited. Biomed. Opt. Express (2017); 8; 726-735. DOI: 10.1364/BOE.8.000726.
    • Xia P, Huang Z, Li X, Romero JJ, Vullev VI, Pau GSH, Tang ML. On the Efficacy of Anthracene Isomers for Triplet Transmission from CdSe Nanocrystals. ChemComm (2017); 53; 1241–1244. RSC Link. DOI: 10.1039/C6CC08229G.
    • Low K, Wong L, Maldonado M, Manjunath C, Horner C, Perez M, Myung VN, Nam J. Physicoelectrochemical characterization of pluripotent stem cells during self‐renewal or differentiation by a multi‐modal monitoring system. Stem Cell Reports (2017); 8; 1-11. DOI: 10.1016/j.stemcr.2017.03.021.
    • He N, Langley J, Huddleston DE, Ling H, Xu H, Liu C, Yan F, Hu XP. Improved Neuroimaging Atlas of the Dentate Nucleus. The Cerebellum 2017 (2017).DOI: 10.1007/s12311-017-0872-7.
  • 2016
    • Prudente CN, Stilla R, Singh S, Buetefisch C, Evatt M, Factor S, Freeman A, Hu X, Hess EJ, Sathian K, and Jinnah HA. A functional magnetic resonance imaging study of head movements in cervical dystonia.Frontiers Neurol (2016); 7; 201. DOI: 10.3389/fneur.2016.00201.
    • Liang P, Deshpande G, Zhao S, Liu J, Hu X (co-corresponding author), and Li K (co-corresponding author). Altered directional connectivity between emotion network and motor network in Parkinson's disease with depression. Medicine (2016); 95(30); e4222. DOI: 10.1097/MD.0000000000004222.
    • He N, Huang P, Ling W, Langley J, Liu C, Ding B, Huang J, Xu H, Zhang Y, Zhang Z, Hu X, Chen S, and Yan F. Dentate nucleus iron deposition is a potential biomarker for tremor-dominant Parkinson’s disease. NMR Biomed (2016). DOI: 10.1002/nbm.3554.
    • Meng Y, Hu X, Zhang X and Bachevalier J. Decreased functional connectivity in dorsolateral prefrontal cortical networks in adult macaques with neonatal hippocampal lesions: relations to visual working memory deficits. Neurobio Learn Mem (2016); 134; 31-37. DOI: 10.1016/j.nlm.2016.04.003.
    • Langley J, Huddleton DE, Merritt M, Chen X, McMurray R, Silver M, Factor SA and Hu X. Diffusion tensor imaging of the substantia nigra in Parkinson’s disease revisited.Human Brain Mapp (2016); 37(4); 2547-2556. DOI: 10.1002/hbm.23192.
    • Chen S, Langley J, Chen X, and Hu X. Modeling of brain dynamics using resting-state fMRI with Gaussian hidden Markov model.Brain Connect (2016). DOI: 10.1089/brain.2015.0398.
    • Ji B, Li Z, Li K, Li L, Langley J, Shen H, Nie S, Zhang R, and Hu X. Dynamic thalamus parcellation from resting-state fMRI data.Human Brain Mapp (2016); 37(3); 954-967. DOI: 10.1002/hbm.23079.
    • Jiang B, Hu X, and Gao H. Lorentzian sparsity based spectroscopic reconstruction for fast high- dimensional magnetic resonance spectroscopy. Phys Med Bio (2016); 60; 1. DOI: 10.1088/0031-9155/61/1/215.
    • Li Z, Coles CD, Lynch ME, and Hu X. Longitudinal changes of amygdala and default mode activation in adolescents prenatally exposed to cocaine. Neurotox & Terat (2016); 53; 24-32. DOI: 10.1016/j.ntt.2015.11.004.
    • Haroon E, Fleischer C, Felger J, Chen X, Woolwine B, Patel T, Hu X, and Miller A. Conceptual convergence: increased inflammation is associated with increased basal ganglia glutamate in patients with major depression. Mol Psychiatry (2016); 21; 1351-1357. DOI: 10.1038/mp.2015.206.
    • Felger J, Li Z, Haroon E, Woolwine B, Jung M, Hu X, and Andrew Miller. Inflammation is associated with decreased functional connectivity within corticostriatal reward circuitry in depression. Mol Psychiatry (2016); 21; 1538-1565. DOI: 10.1038/mp.2015.168.
    • Tambo A, and Bhanu B. Segmentation of pollen tube growth videos using dynamic bi-modal fusion and seam carving.” IEEE Transactions on Image Processing (2016); 25(5):1993-2004. Pubmed Link. DOI: 10.1109/TIP.2016.2538468.
    • Zahedi A, On V, Lin S, Bays BC, Omaiye E, Bhanu B, and Talbot P. Evaluating cell processes, quality, and biomarkers in pluripotent stem cells using video bioinformatics. Plos One (2016); 11(2); e0148642. Pubmed Link. DOI: 10.1371/journal.pone.0148642.
    • Adapala RK, Thoppil RJ, Ghosh K, Cappelli HC, Dudley AC, Paruchuri S, Keshamouni V, Klagsbrun M, Meszaros JG, Chilian WM, and Ingber DE. Activation of mechanosensitive ion channel TRPV4 normalizes tumor vasculature and improves cancer therapy. Oncogene (2016); 35(3); 314-22. Pubmed Link. DOI: 10.1038/onc.2015.83
    • Blazek AM, Nam J, Gupta R, Pradhan M, Perera P, Weisleder NL, Hewett TE, Chaudhari AM, Lee B, Leblebicioglu B, Butterfield TA, and Agarwal S. Exercise-Driven Metabolic Pathways in Healthy Cartilage. Osteoarthritis & Cartilage (2016); 24.7; 1210-1222. DOI: 10.1016/j.joca.2016.02.004
    • Cabrera AP, Bhaskaran A, Xu J, Yang X, Scott HA, Mohideen U, Ghosh K. Senescence increases choroidal endothelial stiffness and susceptibility to complement injury: Implications for choriocapillaris loss in AMD. Investigative Ophthalmology & Visual Science (2016); 57(14); 5910-5918. Pubmed Link DOI: 10.1167/iovs.16-19727
    • Cipriano AF, Sallee A, Tayoba M, Cortez Alcaraz MC, Lin A, Guan RG, Zhao ZY, Tayoba M, Sanchez J, and Liu H. Cytocompatibility and Early Inflammatory Response of Human Endothelial Cells in Direct Culture with Mg-Zn-Sr Alloys. Acta Biomaterialia (2016); 16; 30547-5. DOI: 10.1016/j.actbio.2016.10.020. (PMID: 27746360)
    • Croker DE, Monk PN, Halai R, Kaeslin G, Schofield Z, Wu MCL, Clark RJ, Blaskovich MAT, Morikis D, Floudas CA, Cooper MA, Woodruff TM. Discovery of functionally selective C5aR2 ligands. Novel modulators of C5a signaling, Immunology & Cell Biology (2016); 94;787–795 ; Pubmed Link DOI: 10.1038/icb.2016.43. Featured Article. News and Commentary: Kember C. Targeting the Dark Horse of complement: the first generation of functionally selective C5aR2 ligands. Immunology & Cell Biology (2016);  94;717–718. Pubmed Link. DOI: 10.1038/icb.2016.62
    • Espinoza EM, Larsen JM, Vullev VI. What Makes Oxidized N-Acylanthranilamides Stable? J. Phys. Chem. Lett. (2016); 7; 758–764. DOI: 10.1021/acs.jpclett.5b02881
    • Espinoza EM, Xia B, Darabedian N, Larsen JM, Nuñez J, Bao D, Mac JT, Botero F, Wurch M, Zhou F, Vullev VI. Nitropyrene Photoprobes: Making Them, and What Are They Good for? Eur. J. Org. Chem (2016); 343–356. DOI: 10.1002/ejoc.201501339
    • Ferguson TB, Hu XH, Chen C. Methods, systems and computer program products for non-invasive determination of blood flow distribution using speckle imaging techniques and hemodynamic modeling (2016). Google Scholars Link.
    • Gaieb Z, Lo DD, Morikis D. Molecular mechanism of biased ligand conformational changes in CC chemokine receptor 7. Journal of Chemical Information and Modeling (2016); 56; 1808–1822. Pubmed Link. DOI: 10.1021/acs.jcim.6b00367. Paper is featured in journal cover.
    • Hill DA, Anderson LE, Hill CJ, Mostaghim A, Rodgers VGJ, Grover WH. MECs: Building Blocks for Creating Biological and Chemical Instruments PLoS ONE (2016).  DOI: 10.1371/journal.pone.0158706
    • Horner C, Ico G, Johnson J, Zhao Y, Nam J.Microstructure-dependent mechanical properties of electrospun core-shell scaffolds at multi-scale levels. Journal of the Mechanical Behavior of Biomedical Materials (2016); 59; 207-219. DOI: 10.1016/j.jmbbm.2015.12.034
    • Horner C, Hirota K, Liu J, Maldonado M, Park BH, Nam J. Magnitude-Dependent and Inversely-Related Osteogenic/Chondrogenic Differentiation of Human Mesenchymal Stem Cells by Dynamic Compressive Strain. Journal of Tissue Engineering and Regenerative Medicine (2016). DOI: 10.1002/term.2332
    • Ico G, Showalter A, Bosze W, Gott SC, Kim BS, Rao MP, Myung NV, Nam J. Size-dependent piezoelectric and mechanical properties of electrospun P(VDF-TrFE) nanofibers. Journal of Materials Chemistry A 4 (2016); 2293-2304. DOI: 10.1039/C5TA10423H.
    • Johnson I, Wang SM, Silken C, Liu H. A systemic study on key parameters affecting nanocomposite coatings on magnesium substrates. Acta Biomaterialia (2016); pii; S1742-7061(16)30120-9. DOI: 10.1016/j.actbio.2016.03.026. [PMID: 27006335]
    • Krzeszewski M, Kodama T, Espinoza EM, Vullev VI, Kubo T, Gryko DT. Non-Planar Butterfly-Shaped π-Expanded Pyrrolopyrroles. Chem. Eur. J. (2016). DOI: 10.1002/chem.201603282
    • Feng L and Bhanu B. Semantic Concept Co-occurrence Patterns for Image Annotation and Retrieval. IEEE Transactions on Pattern Analysis and Machine Intelligence (2016); Vol. 38; No. 4. DOI: 10.1109/TPAMI.2015.2469281.
    • Feng L, Bhanu B, and Hearty J. A software system for automated identification and retrieval of moth images based on wing attributes. Pattern Recognition (2016); Vol 51. DOI: 10.1016/j.patcog.2015.09.012.
    • Mac JT, Nuñez V, Burns JM, Guerrero YA, Vullev VI, Anvari B. Erythrocyte-Derived Nano-Probes Functionalized with Antibodies for Targeted Near Infrared Fluorescence Imaging of Cancer Cells. Biomedical Optics Express (2016); 7; 1311–1322. DOI: 10.1364/BOE.7.001311
    • Mohan RR, Huber GA, Morikis D. Electrostatic steering accelerates C3d:CR2 association. Journal of Physical Chemistry B 120: (2016); 8416-8423. DOI: 10.1021/acs.jpcb.6b02095. Special issue for Professor J. Andrew McCammon Festschrift.
    • Maldonado M, Luu RJ, Ramos M, Nam J. ROCK Inhibitor Primes Human Induced Pluripotent Stem Cells to Selectively Differentiate Towards Mesendodermal Lineage via Epithelial-Mesenchymal Transition-like Modulation. Stem Cell Research (2016); 17.2; 222-227. DOI: 10.1016/j.scr.2016.07.009.
    • Maldonado M, Ico G, Low K, Luu RJ, Nam J. Enhanced Lineage-Specific Differentiation Efficiency of Human Induced Pluripotent Stem Cells by Engineering Colony Dimensionality Using Electrospun Scaffolds. Advanced Healthcare Materials (2016); 5(12); 1408-12. featured on the journal cover. DOI: 10.1002/adhm.201600141.
    • Mohan RR, Cabrera AP, Harrison RES, Gorham RD Jr, Johnson LV, Ghosh K, Morikis D. Peptide Redesign for Inhibition of the complement system: Targeting age-related macular degeneration. Molecular Vision (2016); 22; 1280-1290. DOI: www.molvis.org/molvis/v22/1280/.
    • Monickaraj F, McGuire PG, Nitta CF, Ghosh K, and Das A. Cathepsin D: an Mϕ-derived factor mediating increased endothelial cell permeability with implications for alteration of the blood-retinal barrier in diabetic retinopathy. The FASEB Journal 30.4 (2016); 1670-82. Pubmed Link DOI: 10.1096/fj.15-279802
    • Ravoori MK, Singh S, Bhavane R, Sood AK, Anvari B, Bankson J, Annapragada A, and Kundra V. Multimodal magnetic resonance and near infrared fluorescence imaging of intraperitoneal ovarian cancer using a dual-mode-dual gadolinium liposomal contrast agent. Scientific Reports (2016); 22; 38991. DOI: 10.1038/srep38991
    • Nalbandian MJ, Zhang M, Sanchez J, Nam J, Cwiertny DM, Myung NV. Mesoporous θ-Alumina/Hematite (θ-Al2O3/Fe2O3) Composite Nanofibers for Heavy Metal Removal. Science of Advanced Materials (2016). DOI: 10.1166/sam.2017.3013
    • Nuñez V, Vullev VI. Chemical Aspects of Biocompatible Interfaces. Encyclopedia of Surface and Colloid Science, Third Edition (2016); pp. 1-22. DOI: 10.1081/E-ESCS3-120051159
    • Purc A, Espinoza EM, Nazir R, Romero JJ, Skonieczny K, Jeżewski A, Larsen JM, Gryko DT, Vullev VI. Gating that Suppresses Charge Recombination – the Role of Mono-N-Arylated DiketopyrrolopyrrolE. J. Am. Chem. Soc. (2016). DOI: 10.1021/jacs.6b04974.
    • Scott HA, Quach B, Yang X, Ardekani S, Cabrera AP, Wilson R, Messaoudi-Powers I, and Ghosh K. Matrix Stiffness Exerts Biphasic Control Over Monocyte-Endothelial Adhesion via Rho-mediated ICAM-1 Clustering. Integrative Biology (2016); 8(8):869-78 Pubmed Link DOI: 10.1039/c6ib00084c
    • Sarshar M, Liu T, Anvari B. Combined optical micromanipulation and interferometric topography (COMMIT). Biomedical Optics Express (2016); 7; 1365-1374. DOI: 10.1364/BOE.7.001365
    • Skonieczny K, Jaeduk Yoo J, Larsen JM, Espinoza EM, Barbasiewicz M, Vullev VI, Lee CH, Gryko DT. How To Reach Intense Luminescence for Compounds Capable of Excited-State Intramolecular Proton Transfer? Chem. Eur. J. (2016); 22; 7485–7496. DOI: 10.1002/chem.2015049 44
    • Su N, Guan R, Wang X, Wang Y, Jiang W, Liu H. Grain Refinement in an Al-Er Alloy during Accumulative Continuous Extrusion Forming. Journal of Alloys and Compounds (2016); 680; 283-290. DOI: 10.1016/j.jallcom.2016.04.137
    • Tian Q, Deo M, Rivera-Castaneda L, Liu H. Cytocompatibility of Magnesium Alloys with Human Urothelial Cells: A Comparison of Three Culture Methodologies. ACS Biomaterials Science and Engineering (2016). DOI: 10.1021/acsbiomaterials.6b00325.
    • Tian Q, Rivera-Castaneda L, Liu H. Optimization of nano-hydroxyapatite/poly(lactic-co-glycolic acid) coatings on magnesium substrates using one-step electrophoretic deposition. Materials Letters (2016). Available online 19 September 2016. DOI: 10.1016/j.matlet.2016.09.072.
    • Tie D, Guan R, Liu H, Cipriano A, Liu Y, Wang Q, Huang Y, Hort N. An In Vivo Study on the Metabolism and Osteogenic Activity of Bioabsorbable Mg-1Sr Alloy. Acta Biomaterialia (2016);29:455-467. DOI: 10.1016/j.actbio.2015.11.014. Epub 2015 Nov 11. (PMID: 26577986)
    • Wetteland CL, Nguyen NYT, and Liu H. Concentration-dependent behaviors of bone marrow derived mesenchymal stem cells and infectious bacteria toward magnesium oxide nanoparticles.Acta biomaterialia (2016); 35; 341-356. DOI: 10.1016/j.actbio.2016.02.032
    • Yang X, Scott HA, Monickaraj F, Xu J, Ardekani S, Nitta CF, Cabrera A, McGuire PG, Mohideen U, Das A, and Ghosh K. Basement membrane stiffening promotes retinal endothelial activation associated with diabetes. The FASEB Journal (2016); 30.2 601-6011 Pubmed Link DOI: 10.1096/fj.15-277962
    • Zewde N, Gorham RD Jr, Dorado A, Morikis D. Quantitative modeling of the alternative pathway of the complement system, PLOS ONE (2016); 11:e0152337 (26 pages, 43 pages supplementary information). DOI: 10.1371/journal.pone.0152337.
    • Zhang C, Brown MQ, van de Ven W, Zhang Z-M, Wu B, Young MC, Synek L, Borchardt D, Harrison R, Pan S, Luo N, Huang Y-M, Ghang Y-J, Ung N, Li R, Isley J, Morikis D, Song J, Guo W, Hooley RJ, Chang C, Yang Z, Zarsky V, Muday GK, Hicks GR, Raikhel NV. Endosidin2 targets conserved exocyst complex subunit EXO70 to inhibit exocytosis Proceedings of the National Academy of Sciences (USA) (2016); 113:E41-E50. DOI: 10.1073/pnas.1521248112.
  • 2015
    • Adapala RK, Thoppil RJ, Ghosh K, Cappelli HC, Dudley AC, Paruchuri S, Keshamouni V, Klagsbrun M, Meszaros JG, Chilian WM, and Ingber DE. Activation of mechanosensitive ion channel TRPV4 normalizes tumor vasculature and improves cancer therapy. Oncogene (2015); 35(3); 314-22. DOI: 10.1038/onc.2015.83.
    • Ardekani S, Scott HA, Gupta S, Eum S, Yang X, Brunelle AR, Wilson SM, Mohideen U, and Ghosh K. Nanoliposomal Nitroglycerin Exerts Potent Anti-Inflammatory Effects. Scientific Reports (2015); 5:16258. Pubmed Link. DOI: 10.1038/srep16258.
    • Augello C*, Liu H . Surface Modification of Magnesium by Functional Polymer Coatings for Neural Applications. in Surface Modification of Magnesium and its Alloys for Biomedical Applications, T.S.N. Sankara Narayanan, Il-Song Park, and Min-Ho Lee (eds.), Woodhead Publishing (2015); pp. 335-353, 2015. DOI: 10.1016/B978-1-78242-078-1.00012-8.
    • Bianchi A, Bhanu B and Obenaus A. High and low level contextual modeling for the detection of mild-traumatic brain injury. A Chapter in Video Bioinformatics – From Live Imaging to Knowledge, Edited by B. Bhanu and P. Talbot, Springer (2015). DOI: 10.1007/978-3-319-23724-4_3.
    • Cruz AC, Bhanu B, and Thakoor NS. Understanding of the biological process of non-verbal communication: facial motion and expression recognition. A Chapter in Video Bioinformatics – From Live Imaging to Knowledge, Edited by B. Bhanu and P. Talbot, Springer (2015). DOI: 10.1007/978-3-319-23724-4_18.
    • Tambo AL and Bhanu B. Dynamic Bi-modal fusion of images for segmentation of pollen tubes in video. IEEE International Conference on Image Processing (2015); 27-30; Quebec, Canada. DOI: 10.1109/TIP.2016.2538468.
    • Tambo AL, Bhanu B, Ung N,Thakoor N, Luo N, Yang Z. Understanding pollen tube growth dynamics using the unscented Kalman filter. Pattern Recognition Letters (2015). Link. DOI: 110.1016/j.patrec.2015.07.016.
    • Bhanu B, Lovell B, Prati A, Qureshi F. Special issue on distributed smart sensing for mobile vision. EEE Sensors Journal (2015); Vol. 15; No. 5; pp. 2631-2714. Link DOI: 10.1109/JSEN.2015.2413151.
    • Bhanu B, Prati A, Qureshi F(Editors). Special Issue on Image Understanding for Real-World Distributed Systems. Computer Vision and Image Understanding (CVIU). DOI: 10.1016/j.cviu.2015.03.009.
    • Guan BX, Bhanu B, Talbot P, J-H. Weng. Bio-inspired segmentation and detection methods for human embryonic stem cells. A Chapter in Video Bioinformatics – From Live Imaging to Knowledge, Edited by Bhanu N, Talbot P. Springer (2015). DOI: 10.1007/978-3-319-23724-4_7.
    • Bennett KM, Gorham RD, Gusti V, Trinh L, Morikis D, Lo DD. Hybrid flagellin as a T cell independent vaccine scaffold. BMC Biotechnology (2015); 15;71. DOI: 10.1186/s12896-015-0194-0. Linc. Suppl.
    • Chen C, Gorham RD Jr., Gaieb Z, and Morikis D. Electrostatic interactions between complement regulator CD46(SCR1-2) and adenovirus Ad11/Ad21 fiber protein knob. Molecular Biology International (2015); Article ID 967465; 15 pages. DOI:10.1155/2015/967465. Link. Suppl.
    • Cipriano AF*, Liu H. Biomaterials and nano-scale features for ligament regeneration in Nanomaterials in Tissue Engineering: Characterization, Fabrication and Applications. Gaharwar AK, Sant S, Hancock MJ, Hacking SA (eds.). Woodhead Publishing (2015); pp. 334-360, 2013. DOI: 10.1533/9780857097231.2.334.
    • Cipriano AF, Sallee A, Guan RG, Zhao ZY, Tayoba M, Sanchez J, Liu H. Investigation on Magnesium-Zinc-Calcium Alloys and Bone Marrow Derived Mesenchymal Stem Cell Responses in Direct Culture. Acta Biomaterialia (2015); 12(1); 298-321. Link. DOI: 10.1016/j.actbio.2014.10.018.
    • Gorham RD Jr, Nuñez V, Lin J-H, Rooijakkers SHM, Vullev VI, Morikis D. Discovery of small molecules for fluorescent detection of complement system activation product C3d, Journal of Medicinal Chemistry 58:9535-9545 (2015). DOI: 10.1021/acs.jmedchem.5b01062.
    • Gorham RD Jr, Forest DL, Khoury GA, Smadbeck J, Beecher CN, Healy ED, Tamamis P, Archontis G, Larive CK, Floudas CA, Radeke MJ, Johnson LV, Morikis D. New compstatin peptides containing N-terminal extensions and non-natural amino acids exhibit potent complement inhibition and improved solubility characteristics, Journal of Medicinal Chemistry (2015); 58; 814-826. DOI:10.1021/jm501345y. Link. Suppl.
    • Guerrero YA, Bahmani B, Singh SP, Vullev VI, Kundra V, Anvari B. Virus-Resembling Nano-Structures for Near Infrared Fluorescence Imaging of Ovarian Cancer HER2 Receptors. Nanotechnology (2015); 26; 435102 (11pp). DOI: 10.1088/0957-4484/26/43/435102.
    • Harrison R, Gorham RD Jr, Morikis D.Energetic evaluation of binding modes in the C3d and factor H (CCP 19-20) complex. Protein Science 24;789-802. DOI:10.1002/pro.2650. Link. Suppl.
    • Cabrera IE, Tambo AL, Cruz AC, Guan BX, Bhanu B, Borkovich KA. Quantitative analyses using video bioinformatics and image analysis tools during growth and development in the multicellular fungus Neurospora Crassa. A Chapter in Video Bioinformatics – From Live Imaging to Knowledge. Edited by B. Bhanu and P. Talbot. Springer (2015). Link DOI: 10.1007/978-3-319-23724-4_13.
    • Gigante J, Zee M, Adunur N, Burdick A, Lang X, Lyubovitsky JGMultiphoton microscopy and microstructure within collagen 3D hydrogels: an advanced real-time optical Imaging module. in submission (2015)
    • Sarraf JH, Qian Z, Skarpova L, Wang B, Herbig R, Maryska M, Bartovska L, Havrda J, and Anvari B. Direct probing of dispersion quality of ZrO 2 nanoparticles coated by polyelectrolyte at different concentration suspensions. Nanoscale Research Letters (2015); 10; 456. DOI: 10.1186/s11671-015-1157-z.
    • Iskandar ME, Aslani A, Tian Q*, and Liu H. Nanostructured calcium phosphate coatings on magnesium alloys: characterization and cytocompatibility with mesenchymal stem cells. Journal of Materials Science: Materials in Medicine (2015); 26(5): 1-18. DOI: 10.1007/s10856-015-5512-5.
    • Larsen JM, Espinoza EM, Hartman JD, Lin CK, Wurch M, Maheshwari P, Kaushal RK, Marsella MJ, Beran GJO, Vullev VI. Building Blocks for Bioinspired Electrets: Molecular-Level Approach to Materials for Energy and Electronics. Pure Appl. Chem. (2015); 87; 779–792. DOI: 10.1515/pac-2015-0109.
    • Larsen JM, Espinoza EM, Vullev VI.  Bioinspired Molecular Electrets: Bottom-up Approach to Energy Materials and Applications. J. Photon. Energy (2015); 5(1); 055598. DOI: 10.1117/1.JPE.5.055598.
    • Low K, Horner C, Li C, Ico G, Bosze W, Myung N, Nam J. Composition-dependent sensing mechanism of electrospun conductive polymer composite nanofibers. Sensors and Actuators B(2015); 208; 235-242. DOI: 10.1016/j.snb.2014.09.121.
    • An L, Kafai M, Yang S and Bhanu B. Person Re-Identification with Reference Descriptor. IEEE Transactions on Circuits and Systems for Video Technology (2015). Link DOI: 10.1109/TCSVT.2015.2416561.
    • An L, Yang S and Bhanu B. Person re-identification by robust canonical correlation analysis. IEEE Signal Processing Letters (2015); 22(8);1103-1107. Link Link DOI: 10.1109/LSP.2015.2390222.
    • Feng L, and Bhanu B. Semantic Concept Co-occurrence Patterns for Image Annotation and Retrieval.  EEE Transactions on Pattern Analysis and Machine Intelligence (2015). Link DOI: 10.1109/TPAMI.2015.2469281.
    • Feng L, and Bhanu B. Understanding dynamic social grouping behaviors of pedestrians.  IEEE Selected Topics on Signal Processing (2015); Vol. 9; No. 2; pp. 317-329. Link DOI: 10.1109/JSTSP.2014.2365765.
    • Feng L, and Bhanu B. Tracking people by evolving social groups: An approach with social network perspective. IEEE Winter Applications Computer Vision (WACV) Conference (2015); Big Island, HI. Link DOI: 10.1109/WACV.2015.22.
    • Feng L, Bhanu B, and Heraty J. A software system for automated identification and retrieval of moth images based on wing attributes. Pattern Recognition (2015). Link DOI: 10.1016/j.patcog.2015.09.012.
    • Feng L, Bhanu B, and Heraty J. Identification and retrieval of moth images based on wing pattern. A Chapter in Video Bioinformatics – From Live Imaging to Knowledge. Edited by Bhanu B, and Talbot P. Springer 2015. DOI: 10.1007/978-3-319-23724-4_19.
    • Maldonado M, Wong L, Echeverria C, Ico G, Low K, Fujimoto T, Johnson J, Nam J. The effects of electrospun substrate-mediated cell colony morphology on the self-renewal of human induced pluripotent stem cells. Biomaterials (2015); 50; 10-19. DOI: 10.1016/j.biomaterials.2015.01.037.
    • Melissa EM, Mike HS, Carissa RL, Jenny SI, Michael OC, Devin KB, Park BH. Localization of cortical tissue optical changes during seizure activity in vivo with optical coherence tomography. Biomedical Optics Express (2015); 6(15); 1812-1827. DOI: 10.1364/BOE.6.001812.
    • Monickaraj F, McGuire PG, Nitta CF, Ghosh K, and Cathepsin DA.  An Mϕ-derived factor mediating increased endothelial cell permeability with implications for alteration of the blood-retinal barrier in diabetic retinopathy. The FASEB Journal (2015): fj-15. DOI: 10.1096/fj.15-279802.
    • Muk S, Gorham RD Jr, Morikis D. Regulation of complement activation through factor D inhibition: a drug discovery study. UCR Undergraduate Research Journal (2015); 9; 85-90. Link.
    • Eberle MM, Rodriguez CL, Szu JI, Wang Y, Hsu MS, Binder DK, Park BH. Visualizing Cortical Tissue Optical Changes During Seizure Activity with Optical Coherence Tomography. Springer (2015). ISBN: 978-3-319-23724-4 DOI 10.1007/978-3-319-23724-4_6 Abstract. DOI: 10.1007/978-3-319-23724-4_6.
    • Kafai M, An L, Eshaghi K and Bhanu B. A reference-based framework for pose invariant face recognition. International Workshop on Biometrics in the Wild held in conjunction with 11th IEEE International Conference on Automatic Face and Gesture Recognition (2015); May 4-8; Ljubljana, Slovenia. Link DOI: 10.1109/FG.2015.7284836.
    • Nalbandian M, Zhang M, Sanchez J, Choa Y, Nam J, Cwiertny D, Myung N. Synthesis and optimization of Fe2O3 nanofibers for chromate adsorption from contaminated water sources. Chemosphere (2015); Vol. 144; p.975-981.DOI: 10.1016/j.chemosphere.2015.08.056.
    • Nam J, Perera P, Gordon R, Jeong YH, Blazek AD, Kim DG, Tee BC, Sun Z, Eubank TD, Zhao Y, Lablebecioglu B, Liu S, Litsky A, Weisleder NL, Lee BS, Butterfield T, Schneyer AL, Agarwal S. Follistatin-like 3 is a mediator of exercise-driven bone formation and strengthening (2015); Bone 78; 62-70. DOI: 10.1016/j.bone.2015.04.038.
    • Nguyen TY, Cipriano AF, Guan R, Zhao Z, and Liu H. In Vitro Interactions of Blood, Platelet, and Fibroblast with Biodegradable Magnesium-Zinc-Strontium Alloys. Journal of Biomedical Materials Research Part A (2016). Accepted 02/17/2015. Epub ahead of print. DOI: 10.1002/jbm.a.35429. (PMID: 25690931)
    • Nieden NZ, Lang X, Turgman C, Larsen J, Granelli J, Hwang YJ, and Lyubovitsky JG.  Fluorescent hydrogels as a potential scaffold for embryoid body formation and osteogenic differentiation of embryonic stem cells. ACS Applied Materials and Interfaces (2015); 7; 10599–10607. DOI: 10.1021/acsami.5b02368.
    • Thakoor NS, Cruz AC, and Bhanu B. Video bioinformatics databases and software. A Chapter in Video Bioinformatics – From Live Imaging to Knowledge. Edited by Bhanu B, and Talbot P. Springer (2015). DOI: 10.1007/978-3-319-23724-4_17.
    • Thakoor NS, Sunderrajan S, An L, Bhanu B, Manjunath BS. Tracking people in camera networks. IEEE Computer; (Tentatively April 2015).  Ung N, Tambo AL, Bhanu B, Hicks GR, and Raikhel NV. EndoQuant: An image analysis package for automated quantitative cellular phenotyping in plant cells. Submitted to Molecular Plant (2015).
    • Dhall S, Silva SP, Liu Y, Hrynyk M, Garcia M, Chan A, Lyubovitsky J, Neufeld RJ, Martins-Green M. Release of insulin from PLGA-alginate dressing stimulates regenerative healing of burn wounds in rats. Clinical science (2015). DOI: 10.1042/CS20150393.
    • Schultz J. Thirty-Fifth Anniversary of the Optical Affinity Sensor for Glucose: A Personal Retrospective. Journal of Diabetes Science and Technology (2015); Vol.9(1); 153-155 DOI: 10.1177/1932296814552477.
    • Yang S, An L, Kafai M and Bhanu B. To Skip or not to skip? A Dataset of spontaneous affective response of online advertising (SARA) for audience behavior analysis. 11th IEEE International Conference on Automatic Face and Gesture Recognition (2015); Ljubljana, Slovenia. Link
    • Kumar S, Bhanu B, Thakoor N, and Ghosh S. Modeling uncertainties in performance of object recognition. Mathematical Scientist (2015); Vol. 40; No. 1. Link
    • Tian Q, and Liu H. Electrophoretic Deposition and Characterization of Nanocomposites and Nanoparticles on Magnesium Substrates. Nanotechnology (2015); 26(17); 175102. DOI: 10.1088/0957-4484/26/17/175102.
    • Mei T, An L, and Bhanu B. Context guided belief propagation for remote sensing image classification. Applied Optics (2015); Vol. 54; No. 11; pp. 3372-3382. Link DOI: 10.1364/AO.54.003372.
    • Upadhyayula S, Nuñez V, Espinoza EM, Larsen JM, Bao D, Shi D, Mac J, Anvari B, Vullev VI. Photoinduced Dynamics of a Cyanine Dye: Parallel Pathways of Non-radiative Deactivation Involving Multiple Excited-State Twisted Transients. Chem. Sci (2015); 6; 2237–2251. DOI: 10.1039/C4SC02881C
    • Wang P, Xia M, Liang O, Sun K, Cipriano AF, Schroeder T, *Liu H, Xie YH. Label-free SERS Selective Detection of Dopamine and Serotonin Using Graphene-Au Nanopyramid Heterostructure. Analytical Chemistry (2015); 87(20); 10255-10261 Epub ahead of print. DOI: 10.1021/acs.analchem.5b01560 (PMID: 26382549).
    • Lang X, Spousta M, Hwang YJ, and Lyubovitsky JG. Noninvasive imaging of embryonic stem cell cultures by multiphoton microscopy reveals significance of collagen hydrogel preparation parameters. RSC Analytical Methods (2015). DOI: 10.1039/C5AY02520F (2015).
    • Lang X, Spousta M, and Lyubovitsky J. Detecting the collagen-based hydrogels' degradation by Multiphonton Microscopy (MPM). Proc. SPIE (2015); 9329-109. DOI: 10.1117/12.2080559 (2015).
    • Lang X, and Lyubovitsky JG. Structural dependency of collagen fibers on ion types revealed by in situ second harmonic generation (SHG) imaging," RSC Analytical Methods, 7, 1680-1690 (2015) DOI: 10.1039/C4AY02242D.
    • Lang X, Zee MV, Burdick A, Vu A, and Lyubovitsky JG. Structural, mechanical and optical properties of cross-linked collagen hydrogels are affected by the “age” of genipin solutions. in submission (2015)
    • Chen X, Qin Z, An L and Bhanu B. Multi-target tracking by online learned elementary grouping model with non-linear motion context. IEEE Trans. on Circuits and Systems for Video Technology (2015). DOI: 10.1109/TCSVT.2015.2511480.
    • Guan X, Bhanu B, Talbot P, and Weng JH. Extraction of blebs in human embryonic stem cell videos. EEE/ACM Transactions on Computational Biology and Bioinformatics (2015). DOI: 10.1109/TCBB.2015.2480091.
    • Guerrero Y, Bahmani B, Singh S, Vullev VI, Kundra V, and Anvari B. Virus-resembling nano-structures for near infrared fluorescence imaging of ovarian cancer HER2 receptors. Nanotechnology (2015); 26; 435102. DOI: 10.1088/0957-4484/26/43/435102.
    • Zhang N, Lock J, Sallee A*, and Liu H. Magnetic Nanocomposite Hydrogel for Potential Cartilage Tissue Engineering: Synthesis, Characterization, and Cytocompatibility with Bone Marrow Derived Mesenchymal Stem Cells. ACS Applied Materials and Interfaces. 7(37): pp 20987–20998, 2015. DOI: 10.1021/acsami.5b06939.
    • Zhao ZY, Guan RG, Guan XH, Zhang J, Sun XP, Liu H. Effects of Electromagnetic Stirring, Shearing, and Extrusion on TiB2 and TiAl3 Particles in Al-5Ti-1B (wt.%) Alloy. Materials and Manufacturing Processes (2015); 0; 1-6.  DOI: 10.1080/10426914.2015.1019109.
    • Jin Z, and Bhanu B. Analysis-by-synthesis: Pedestrian tracking with crowd simulation models in a multi-camera video network. Computer Vision and Image Understanding (2015). DOI: 10.1016/j.cviu.2014.10.001.
  • 2014
    • Farag AA, Bhanu B, Hancock E, Medioni G, and Yang J (Editors). Special Issue on 'Face Biometrics in the Wild'.IEEE Trans. on Information Forensics and Security (2014); Vol. 9; No. 12; pp. 2019-2192. DOI: 10.1109/TIFS.2014.2363512.
    • Bianchi A, Bhanu B, and Obenaus A. Dynamic low-level context for the detection of mild traumatic brain injury.IEEE Transactions on Biomedical Engineering (2014). DOI: 10.1109/TBME.2014.2342653.
    • Bianchi A, Bhanu B, Donovan V, and Obenaus A. Visual and contextual modeling for the detection of repeated mild traumatic brain injury. IEEE Transactions on Medical Imaging (2014); Vol. 33; No.1. DOI: 10.1109/TMI.2013.2269317.
    • Cruz AC, Bhanu B and Thakoor NS. One shot emotion scores for facial emotion recognition. IEEE International Conference on Image Processing. Paris, France, Oct. 27-30, 2014. DOI: 10.1109/ICIP.2014.7025275.
    • Bianchi A, Bhanu B, Donovan V, and Obenaus A. Visual and contextual modeling for the detection of repeated mild traumatic brain injury. IEEE Transactions on Medical Imaging (2014); 33(1).  DOI: 10.1109/TMI.2013.2269317.
    • Cruz A, Bhanu B, and Thakoor N. Vision and attention theory based sampling for continuous facial emotion recognition. IEEE Transactions on Affective Computing (2014). DOI: 10.1109/TAFFC.2014.2316151.
    • Adini I, Ghosh K, Adini A, Chi ZL, Yoshimura T, Benny O, Connor KM, Rogers MS, Bazinet L, Birsner AE, and Bielenberg DR. Melanocyte-secreted fibromodulin promotes an angiogenic microenvironment. The Journal of Clinical Investigation (2014); 425-436. DOI: 10.1172/JCI69404.
    • Tambo AL, and Bhanu B. Integrated model for understanding pollen tube growth in video. 22nd International Conference on Pattern Recognition, Stockholm, Sweden, August 24-28, 2014. DOI: 10.1109/ICPR.2014.455.
    • Baddour B, Gorham, RD Jr, Morikis D. Electrostatic analysis of complement factor D. UCR Undergraduate Research Journal (2014); 8; 5-12. Link.
    • Bahmani B1, Guerrero Y, Bacon D, Kundra V, Vullev VI, Anvari B. Functionalized polymeric nanoparticles loaded with indocyanine green as theranostic materials for targeted molecular near infrared fluorescence imaging and photothermal destruction of ovarian cancer cells. Lasers Surg Med. (2014);  Sep;46(7); 582-92. Epub 2014 Jun 24. DOI: 10.1002/lsm.22269.
    • Bao D, Upadhyayula S, Larsen JM, Xia B, Georgieva B, Nuñez V, Espinoza EM, Hartman JD, Wurch M, Chang A, Lin CK, Larkin J, Vasquez K, Beran GJO, Vullev VI. Dipole-Mediated Rectification of Intramolecular Photoinduced Charge Separation and Charge Recombination. J. Am. Chem. Soc. (2014); 136; 12966–12973. DOI: 10.1021/ja505618n.
    • Guan BX, Bhanu B, Talbot P, Lin S. Bio-driven cell region detection in human embryonic stem cell assay. IEEE/ACM Transactions on Computational Biology and Bioinformatics (2014). DOI: 10.1109/TCBB.2014.2306836.
    • Guan BX, Bhanu B, Talbot P, Lin S and Weng N. Comparison of texture features for human embryonic stem cells with bio-inspired multi-class support vector machine. IEEE International Conference on Image Processing. Paris, France, Oct. 27-30, 2014. DOI: 10.1109/ICIP.2014.7025833.
    • Cipriano AF, Miller CT, Liu H. Anodic Growth and Biomedical Applications of TiO2 Nanotubes. Journal of Biomedical Nanotechnology (2014); 10(10); 2977-3003. DOI: 10.1166/jbn.2014.1927.
    • Cipriano AF, Miller C, and Liu H. Cytocompatibility of Magnesium-Zinc-Calcium Alloys with Bone Marrow Derived Mesenchymal Stem Cells. Advanced Materials Research (2014); 922; 1-6. DOI: 10.4028/www.scientific.net/AMR.922.1.
    • Freeman* EG, Wisotsky Z, and Dahanukar A. Detection of sweet tastants by a conserved group of insect gustatory receptors. Proceedings of the National Academy of Sciences (2014); vol. 111; no. 4; pp. 1598-1603. DOI: 10.1073/pnas.1311724111.
    • Gorham RD Jr, Rodriguez W, Morikis D. Molecular analysis of the interaction between staphylococcal virulence factor Sbi-IV and complement C3d. Biophysical Journal (2014); 106; 1164-1173. DOI: 10.1016/j.bpj.2014.01.033. Link. Suppl(incl. 3 videos).
    • Halai R, Bellows-Peterson ML, Branchett, W, Smadbeck J, Kieslich CA, Croker DE, Cooper MA, Morikis D, Woodruff TM, Floudas CA, Monk PN. Derivation of ligands for the complement C3a receptor from the C-terminus of C5a. European Journal of Pharmacology (2014); 745;176-181. DOI: 10.1016/j.ejphar.2014.10.041 Link. Suppl.
    • Johnson I*, Islam MS, Park BH, and Liu H. Investigation of Biodegradable Composite Coated Magnesium Alloy Using Optical Coherence Tomography. Advanced Materials Research (2014); 922; 292-297. DOI: 10.4028/www.scientific.net/AMR.922.292.
    • Jung B, Vullev VI, Anvari B. Revisiting Indocyanine Green: Effects of Serum and Physiological Temperature on Absorption and Fluorescence Characteristics. IEEE Journal of Selected Topics in Quantum Electronics (2014); 20; 7000409/1-7000409/9. DOI: 10.1109/JSTQE.2013.2278674.
    • Knapik D, Perera P, Nam J, Blazek A, Rath B, Leblebicioglu B, Das H, Wu L, Hewett T, Agarwal S, Robling A, Flanigan D, Lee B, and Agarwal S. Mechanosignaling in Bone Health, Trauma and Inflammation, Antioxidants and Redox Signal (2014); 20(6); 970-985. DOI: 10.1089/ars.2013.5467.
    • Lederman I, Morikis D. Network analysis of intra-molecular interactions of the HIV-1 gp120 V3 loop. UCR Undergraduate Research Journal (2014); 8; 25-32. Link.
    • Feng L, and Bhanu B. Understanding dynamic social grouping behaviors of pedestrians. IEEE Selected Topics on Signal Processing (2014). DOI: 10.1109/JSTSP.2014.2365765.
    • Li C, Low K, Bosze W, Nam J, Myung N. Electrospun Polyaniline/Poly (ethylene oxide) Composite Nanofibers Based Gas Sensor Electroanalysis (2014); 26(4); 711-722. DOI: 10.1002/elan.201300641.
    • Liu Y, Kieslich CA, Morikis D, Liao J. Engineering pre-SUMO4 as efficient substrate of SENP2. Protein Engineering Design & Selection (2014); 27;117-126. DOI: 10.1093/protein/gzu004. Link.
    • Lock JY, Wyatt E, Upadhyayula S, Whall A, Nuñez V, Vullev V, Liu H. Degradation and Antimicrobial Properties of Magnesium Alloys in Artificial Urine for Potential Resorbable Ureteral Stent Applications. J. Biomed. Mater. Res., Part A (2014); 102 (3); 781-792. DOI: 10.1002/jbm.a.34741.
    • Low K, Chartuprayoon N, Echeverria C, Li C, Bosze W, Myung N, Nam J. Polyaniline/poly(ε-caprolactone) composite electrospun nanofiber-based gas sensors: optimization of sensing properties by dopants and doping concentration. Nanotechnology (2014); 25(11); 115501. DOI: 10.1088/0957-4484/25/11/115501.
    • Mai ED*, and Liu H. Investigation on Magnesium Degradation under Flow versus Static Conditions using a Novel Impedance-Driven Flow Apparatus. Progress in Natural Science: Materials International (2014); 24; 554-560. Online 10/28/2014. DOI: 10.1016/j.pnsc.2014.08.012.
    • Kafai M, Eshghi K and Bhanu B. Discrete cosine transform based locality-sensitive hashes for retrieval. IEEE Transactions on Multimedia (2014). DOI: 10.1109/TMM.2014.2305633.
    • Kafai M, An L, and Bhanu B. Reference face graph for face recognition. IEEE Transactions on Information Forensics and Security (2014). DOI: 10.1109/TIFS.2014.2359548.
    • Martins-Green M, Frankos M, Adhami N, Valdez M, Goodwin B, Lyubovitsky J, Dhall S, Garcia M, Egiebor I, Martinez B, Jacob III P, Havel C, Yu L, Curras-Collazo M. Cigarette smoke toxins deposited on surfaces: Implications for human health. PLoS ONE (2014); 9(1); e8639. DOI: 10.1371/journal.pone.0086391.
    • McBride DW, Rodgers VGJ. A Generalized Free-Solvent Model for the Osmotic Pressure of Multi Component Solutions Containing Protein-Protein Interactions. accepted Mathematical Biosciences (2014). DOI: 10.1016/j.mbs.2014.04.002.
    • McBride DW, Szu JI, Hale C, Hsu MS, Rodgers VGJ, Binder DK. Reduction of Cerebral Edema Following TBI using an Osmotic Transport Device. Journal of Neurotrauma (2014). DOI: 10.1089/neu.2014.3439.
    • Nguyen TY, Guan R, Cipriano AF, Zhao Z, and Liu H. Characterization of Magnesium Alloy Degradation in Whole Blood and Platelet Rich Plasma. Advanced Materials Research (2014); 922; 543-548. DOI: 10.4028/www.scientific.net/AMR.922.543.
    • Ghosh N, Sun Y, Bhanu B, Ashwal S, Obenaus A. Automated detection of brain abnormalities in neonatal hypoxia ischemic injury from MR images. Medical Image Analysis (2014). DOI: 10.1016/j.media.2014.05.002.
    • Nuñez V, Vullev VI. Chemical Aspects of Biocompatible Interfaces. The Encyclopedia of Surface and Colloid Science (2014). DOI: 10.1081/E-ESCS3-120051159.
    • Thakoor N, and Bhanu B. Make and model recognition for passenger vehicles. IEEE International Conference on Image Processing, Paris, France, Oct. 27-30, 2014. DOI: 10.1109/ICIP.2014.7026121.
    • Ojha H, Panwar HS, Gorham RD Jr, Morikis D, Sahu A. Viral regulators of complement activation: structure, function and evolution. Molecular Immunology (2014); 61; 89-99. DOI: 10.1016/j.molimm.2014.06.004. Link.
    • Rodriguez C, Szu J, Eberle M, Wang Y, Hsu M, Binder D, Park BH. Decreased Light Attenuation In Cerebral Cortex During Cerebral Edema Detected Using Optical Coherence Tomography. Neurophotonics Oct-Dec 2014;1: 025004(1-7). DOI: 10.1117/1.NPh.1.2.025004.
    • Sandeep D, Danh CD, Monika G, Jane K, Seyed M, Julia L, Lonardi S, Nothnagel EA, Schiller NL, and Martins-Green M. Generating and Reversing Chronic Wounds in Diabetic Mice by Manipulating Wound Redox Parameters. Journal of Diabetes Research (2014); Article ID 562625, DOI: 10.1155/2014/562625 (2014).
    • Dhall S, Do DC, Garcia M; Wijesinghe DS; Brandon AP, Kim J, Sanchez A, Lyubovitsky J, Gallagher S, Nothnagel EA, Chalfant CE, Patel RP, Schiller N, Martins-Green M. A novel model of chronic wounds: Importance of redox imbalance and biofilm-forming bacteria for establishment of chronicity. PLoS ONE (2014) DOI: 10.1371/journal.pone.0109848.
    • Sarshar M, Wong WT, Anvari B. Comparative study of methods to calibrate the stiffness of a single-beam gradient-force optical tweezers over various laser trapping powers. J Biomed Opt. (2014);19(11);115001. DOI: 10.1117/1.JBO.19.11.115001.
    • Sebaa M, Nguyen TY, Dhillon S, Garcia S, and Liu H. The Effects of Poly(3, 4-ethylenedioxythiophene) (PEDOT) Coating on Magnesium Degradation and Cytocompatibility with Human Embryonic Stem Cells for Potential Neural Applications. Journal of Biomedical Materials Research Part A. (2014). DOI: 10.1002/jbm.a.35142. (PMID: 24677580)
    • Yang S, Kafai M, An L, and Bhanu B. Zapping Index: Using smile to measure advertisement zapping likelihood. IEEE Transactions on Affective Computing (2014). DOI: 10.1109/TAFFC.2014.2364581.
    • Tamamis P, Kieslich CA, Nikiforovich GV, Woodruff TM, Morikis D, Archontis G. Insights into the mechanism of C5aR inhibition by PMX53 via implicit solvent molecular dynamics simulations and docking. BMC Biophysics (2014); 7;5 (16 pages). DOI: 10.1186/2046-1682-7-5.Link. Suppl. Movie.
    • Vandrangi P, Gott SC, Kozaka R, Rodgers VGJ, Rao MP. Comparative Endothelial Cell Response on Topographically Patterned Titanium and Silicon Substrates with Micrometer to Sub-Micrometer Feature Sizes. PLoS ONE (2014); 9;(10); e111465. DOI: 10.1371/journal.pone.0111465.
    • Donovan V, Kim C, Anugerah AK, Coats JS, Oyoyo U, Pardo AC, and Obenaus A. Repeated mild traumatic brain injury results in long-term white-matter disruption. Journal of Cerebral Blood Flow & Metabolism (2014). DOI: 10.1038/jcbfm.2014.6.
    • Chen X and Bhanu B. Soft Biometrics Integrated Multi-target Tracking. 22nd International Conference on Pattern Recognition; Stockholm, Sweden, August 24-28, 2014. DOI: 10.1109/ICPR.2014.710.
    • Lang X and Lyubovitsky JG. Structural dependency of collagen fibers on ion types revealed by in situ second harmonic generation (SHG) imaging (2014). DOI: 10.1039/C4AY02242D.
    • Yang X, Scott HA, Ardekani S, Williams M, Talbot P, Ghosh K. Aberrant Cell and Basement Membrane Architecture Contribute to Sidestream Smoke-Induced Choroidal Endothelial Dysfunction. Investigative Ophthalmology & Visual Science (2014); 55.5; 3140-3147. DOI: 10.1167/iovs.13-13659.
    • Hwang YJ, Lang X, Granelli J, Turgman CC, Gigante J, Lyubovitsky JG. Collagen bioengineered systems: In situ advanced optical spatiotemporal analysis. Proc. SPIE 9129 (2014); 91291H. Invited Paper DOI: 10.1117/12.2052661.
    • Zewde N, Dorado A, Gorham RD Jr, Morikis D. Quantitative modeling of the alternative pathway in complement immune system. UCR Undergraduate Research Journal (2014); 8; 75-82. Link.
    • Jin Z and Bhanu B. Multi-camera pedestrian tracking using group structure. 8th ACM/IEEE International Conference on Distributed Smart Cameras (ICDSC); Venezia, Italy, Nov. 4-7, 2014. DOI: 10.1145/2659021.2659023.
    • Zhang C, Brown MQ, van de Ven W, Zhang Z-M, Wu B, Young MC, Synek L, Borchardt D, Harrison R, Pan S, Luo N, Huang Y-M, Ghang Y-J, Ung N, Li R, Isley J, Morikis D, Song J, Guo W, Hooley RJ, Chang C, Yang Z, Zarsky V, Muday GK, Hicks GR, Raikhel NV. Endosidin2 targets conserved exocyst complex subunit EXO70 to inhibit exocytosis. Proceedings of the National Academy of Sciences (USA)(2014); 113;E41-E50. DOI: 10.1073/pnas.1521248112.
  • 2013
    • Adini A, Adini I, Ghosh K, Benny O, Pravda E, Hu R, Luyindula, D, D’Amato RJ. The stem cell marker Prominin-1/CD133 interacts with vascular endothelial growth factor and potentiates its action. Angiogenesis (2013); 16(2); 405-416. DOI: 10.1007/s10456-012-9323-8.
    • Cruz A, Bhanu B, and Thakoor NS. Facial emotion recognition with anisotropic inhibited Gabor energy histograms. International Conference on Image Processing; Melbourne, Australia, Sept. 15-18, 2013. Link DOI: 10.1109/ICIP.2013.6738868.
    • Bianchi A, Bhanu B, Donovan V and Obenaus A. Detecting mild traumatic brain injury using dynamic low level context. International Conference on Image Processing; Melbourne, Australia, Sept. 15-18, 2013. Link DOI: 10.1109/ICIP.2013.6738241.
    • Bahmani B, Bacon D, Anvari B. Erythrocyte-derived photo-theranostic agents: hybrid nano-vesicles containing indocyanine green for near infrared imaging and therapeutics applications. Scientific Reports (2013); 3; 2180.  DOI: 10.1038/srep02180.
    • Bahmani B, Lytle CY, Walker AM, Gupta S, Vullev VI, Anvari B. Effects of nanoencapsulation and PEGylation on biodistribution of indocyanine green in healthy mice: quantitative fluorescence imaging and analysis of organs. International Journal of Nanomedicine (2013); 8; 1609–1620. DOI: 10.2147/IJN.S42511.
    • Jung B, and Anvari B. Virus-Mimicking Optical Nanomaterials: Near Infrared Absorption and Fluorescence Characteristics and Physical Stability in Biological Environments. ACS Applied Materials & Interfaces (2013); 5(15); 7492-7500. DOI: 10.1021/am401800w.
    • Bhanu B and Das S. Computational Learning for Adaptive Computer Vision. Kluwer Academic Publishers (2013); 600 pages. ISBN 978-0-387-23703-9. Link
    • Guan BX, Bhanu B, Thakoor N, Talbot P, Lin S. Automatic cell region detection by K means with weighted entropy. International Symposium on Biomedical Imaging (ISBI 2013). Link DOI: 10.1109/ISBI.2013.6556501.
    • Chartuprayoon N, Rheem Y, Ng J, Nam J, Chen W, Myung N. Polypyrrole nanoribbon based chemiresistive immunosensors for viral plant pathogen detection. Analytical Methods (2013); 5(14); 3497-3502. DOI: 10.1039/C3AY40371H.
    • Cipriano AF, De Howitt N, Gott SC, Miller C*, Rao MP, Liu H. Bone Marrow Stromal CellAdhesion and Morphology on Micro- and Nanopatterned Titanium. Journal of Biomedical Nanotechnology (2013); 10(4); 660-668(9). DOI: 10.1166/jbn.2014.1760.
    • Cipriano AF, Miller C, and Liu H. Cytocompatibility of Magnesium-Zinc-Calcium Alloys with Bone Marrow Derived Mesenchymal Stem Cells. THERMEC 2013 International Conference on Processing & Manufacturing of Advanced Materials – Processing, Fabrication, Properties, Applications - Conference Proceeding. Las Vegas, Nevada, USA. December 2 - 6, 2013. Advanced Materials Research . 922: 1-6, 2014. DOI: 10.4028/www.scientific.net/AMR.922.1.
    • Cipriano AF, Zhao T, Johnson I, Guan R, Garcia S, Liu H. In vitro Degradation of Four Magnesium-Zinc-Strontium Alloys and Their Cytocompatibility with Human Embryonic Stem Cells. Journal of Materials Science: Materials in Medicine (2013); 24(4); 989-1003. DOI: 10.1007/s10856-013-4853-1.
    • El-Assaad AM, Kieslich CA, Gorham Jr RD, Morikis D. Electrostatic exploration of the C3d-FH4 interaction using a computational alanine scan. Molecular Immunology 48:1844-1850. DOI: 10.1016/j.molimm.2011.05.007. Link. Suppl. Erratum (2013) 53:173-174. Link.
    • Gorham RD, Forest DL, Tamamis P, López de Victoria A, Kraszni M, Kieslich CA, Banna CD, Bellows-Peterson ML, Larive CK, Floudas CA, Archontis G, Johnson LV, Morikis D. Novel Compstatin Family Peptides Prevent Complement-associated Deposit Formation in Human Retinal Pigmented Epithelial Cell Cultures. Experimental Eye Research (2013); 116;96-108. DOI: 10.1016/j.bpj.2014.01.033. Link. Suppl.
    • Guan R, Cipriano AF, Zhao Z, Lock JY, Tie D, Zhao T, Cui T, Liu H. Development and Evaluation of a Magnesium-Zinc-Strontium Alloy for Biomedical Applications - Alloy Processing, Microstructure, Mechanical Properties, and Biodegradation. Materials Science and Engineering (2013). DOI: 10.1016/j.msec.2013.04.054.
    • Guo S, Bao D, Upadhyayula S, Wang W, Guvenc AB, Kyle JR, Bay H, Bozhilov K, Vullev V, Ozkan C, Ozkan M. Photoinduced Electron Transfer between Pyridine-Coated Cadmium Selenide Quantum Dots and Single-Sheet Graphene. Adv. Funct. Mat. (2013); 23 (41); 5199-5211. DOI: 10.1002/adfm.201203652.
    • Gupta S, Chatni MR, Rao ALN, Vullev VI, Wang LV, Anvari B. Virus-mimicking nano-constructs as a contrast agent for near infrared photoacoustic imaging. Nanoscale (2013). DOI: 10.1039/C3NR34124K.
    • Harlow GJ, Cruz AC, Li S, Bhanu B, and Yang Z. Pillars of Plant Cell Polarity: 3-D Automated Microtubule Ordering and Asymmetric Cell Pattern Analysis. NSF IGERT Poster/Video Competition, Washington, DC, May 21-24, 2013. http://posterhall.org/igert2013/posters/370\. Won the $2000 Community Award from NSF. Link
    • Harlow G, Cruz A, Shuo L, Thakoor N, Bianchi A, Chen J, Bhanu B, Yang Z. Automated spatial analysis of ARK2: Putative link between ROP signaling and microtubules. International Symposium on Biomedical Imaging (ISBI 2013). Link DOI: 10.1109/ISBI.2013.6556623.
    • Hwang YJ, Granelli J, Tirumalasetty M, Lyubovitsky J. Microscopic imaging of glyceraldehyde-induced tissue glycation with intrinsic second harmonic generation and two-photon fluorescence contrasts. Proc. SPIE (2013); 8587. DOI: 10.1117/12.2012305.
    • Hwang YJ, Lyubovitsky J. The structural analysis of three-dimensional fibrous collagen hydrogels by raman microspectroscopy. Biopolymers (2013); 99; 349. DOI: 10.1002/bip.22183.
    • Iskandar ME, Aslani A, Liu H. The Effects of Nanostructured Hydroxyapatite Coating onthe Biodegradation and Cytocompatibility of Magnesium Implants. Journal of Biomedical Materials Research Part A (2013). DOI: 10.1002/jbm.a.34530. (PMID: 23359521)
    • Jiang L, Liu Y, Song Y, Saavedra AN, Pan S, Xiang W, Liao J. Internal calibration Förster resonance energy transfer assay: a real-time approach for determining protease kinetics Sensors (Basel) (2013); (4); 4553-70. DOI: 10.3390/s130404553.
    • Johnson I, Akari K, Liu H. NanostructuredHydroxyapatite/Poly(lactic-co-glycolic acid) (PLGA) Composite Coating forControlling Magnesium Degradation in Simulated Body Fluid.Nanotechnology (2013); 24(37); 375103; (PMID: 23975041). DOI: 10.1088/0957-4484/24/37/375103.
    • Johnson I*, Islam MS, Park BH, and Liu H. Investigation of Biodegradable Composite Coated Magnesium Alloy Using Optical Coherence Tomography. THERMEC 2013 International Conference on Processing & Manufacturing of Advanced Materials – Processing, Fabrication, Properties, Applications - Conference Proceeding. Las Vegas, Nevada, USA. December 2 - 6, 2013. Advanced Materials Research. 922; 292-297, 2014. DOI: 10.4028/www.scientific.net/AMR.922.292.
    • Johnson I, Liu H. A Study on Factors Affecting the Degradation of Magnesium and A Magnesium-Yttrium Alloy for Biomedical Applications. PLoS ONE (2013); 8(6); e65603. DOI: 10.1371/journal.pone.0065603.
    • Johnson I, Tian Q, and Liu H. Nanostructured Ceramic and Ceramic-Polymer Composites as Dual Functional Interface for Bioresorbable Metallic Implants. Materials Research Society Proceedings -_ Advances in Structures, Properties and Applications of Biological and Bioinspired Materials (203); Volume 1621: 39-45, mrsf13-1621-h02-07. Boston, MA, USA. December 1-6, 2013. DOI: 10.1557/opl.2014.344. DOI: 10.1557/opl.2014.344.
    • Knapik D, Perera P, Nam J, Blazek A, Rath B, Leblebicioglu B, Das H, Wu L, Hewett T, Agarwal S, Robling A, Flanigan D, Lee B, Agarwal S (2013) Mechanosignaling in Bone Health, Trauma and Inflammation, Antioxidants and Redox Signal. DOI: 10.1089/ars.2013.5467.
    • K. Litomisky and B. Bhanu, "Removing moving objects from point cloud scenes," in Book Entitled, Depth Image Analysis, Editors: Jiang, Bellon, Goldgof, and Oishi. Lecture Notes in Computer Science 21, Springer 2013. DOI: 10.1007/978-3-642-40303-3_6.
    • Atlal M. El-Assaad, Chris A. Kieslich, Ronald D. Gorham, Dimitrios Morikis, Erratum to “Electrostatic exploration of the C3d–FH4 interaction using a computational alanine scan” (2013) 53:173-174. Link. DOI: 10.1016/j.molimm.2012.07.006.
    • L. An, X. Chen, M. Kafai, S. Yang and B. Bhanu, "Improving person re-identification by soft biometrics based re-ranking," 7th ACM/IEEE International Conference on Distributed Smart Cameras (ICDSC), Palm Springs, CA, Oct. 29-Nov. 1, 2013. Link DOI: 10.1109/ICDSC.2013.6778216.
    • L. An, M. Kafai and B. Bhanu, "Dynamic Bayesian network for unconstrained face recognition in surveillance camera networks," IEEE Journal on Emerging and Selected Topics in Circuits and Systems, Vol. 3, No. 2, pp. 155-164, June, 2013. Link DOI: 10.1109/JETCAS.2013.2256752.
    • L. An, M. Kafai, S. Yang and B. Bhanu, "Reference-Based Person Re-Identification," 10th IEEE International Conference on Advanced Video and Signal-based Surveillance, Krakow, Poland, August 27-30, 2013. Link DOI: 10.1109/AVSS.2013.6636647.
    • L. An, S. Yang and B. Bhanu, "Efficient smile detection by extreme learning machine," The 4th International Conference on Extreme Learning Machine Conference, Beijing, China, Oct. 15-17, 2013. Link DOI: 10.1016/j.neucom.2014.04.072.
    • L. Chai, Z. Qin, H. Zhang, J. Guo, B. Bhanu, "MFSC: A new shape descriptor with robustness to deformations," IEEE International Conference on Multimedia and Expo (ICME 2013), San Jose, CA, USA from July 15-19, 2013. Lin DOI: 10.1109/ICMEW.2013.6618256.
    • L. Chai, Z. Qin, H. Zhang, J. Guo, B. Bhanu, "A new multi-scale fuzzy model for histogram-based descriptors,"Workshop on Broadcast and User-Generated Content Recognition and Analysis (BRUREC) in conjunction with IEEE International Conference on Multimedia and Expo (ICME 2013), San Jose, CA, USA from July 15-19, 2013.Link DOI: 10.1109/ICMEW.2013.6618383.
    • L. Feng and B. Bhanu, "Automated identification and retrieval of moth images with semantically related visual attributes on the wings," International Conference on Image Processing, Melbourne, Australia, Sept. 15-18, 2013. Link DOI: 10.1109/ICIP.2013.6738531.
    • Maldonado M,Nam J (2013) The Role of Changes in Extracellular Matrix of Cartilage in the Presence of Inflammation on the Pathology of Osteoarthritis, Biomed Research International. DOI: 10.1155/2013/284873.
    • McBride D, Rodgers VGJ (2012) Interpretation of Negative Second Virial Coefficients from Non-Attractive Protein Solution Osmotic Pressure Data: An Alternate Perspective, Biophysical Chemistry. DOI: 10.1016/j.bpc.2013.09.005.
    • N. Ghosh and B. Bhanu, "Evolving Bayesian graph for 3D vehicle model building from video," IEEE Transactions on Intelligent Transportation Systems, pp. 1-16, October 2013. Link DOI: 10.1109/TITS.2013.2283813.
    • N. Thakoor, B. Bhanu, "Structural signatures for passenger vehicle classification in video," IEEE Transactions on Intelligent Transportation Systems. Accepted June 1, 2013. Published on web July 15, 2013. Link DOI: 10.1109/TITS.2013.2269137.
    • Pan Z, Ghosh K, Hung V, Macri L, Einhorn J, Bhatnagar D, Simon M, Clark RAF, Rafailovich M. Deformation gradients imprint the direction and speed of en masse fibroblast migration for fast healing. Journal of Investigative Dermatology. 2013; 133(10): 2471-2479 DOI: 10.1038/jid.2013.184.
    • P. Talbot, N. zur Nieden, S. Lin, I. Martinez, B. Guan and B. Bhanu, "Use of video bioinformatic tools in stem cell toxicology," A Chapter in the Handbook on Nanotoxicology, Nanomedicine and Stem Cell Use in Toxicology, April 2013. DOI: 10.1002/9781118856017.ch21.
    • Q. Li, H. Zhang, J. Guo, B. Bhanu, and Le An, "Reference-based scheme combined with K-SVD for scene image categorization," IEEE Signal Processing Letters, Vol. 20, No. 1, January 2013. Link DOI: 10.1109/LSP.2012.2228852.
    • Q. Li, Z. Qin, L. Chai, H. Zhang, J. Guo and B. Bhanu, "Representative reference-set and betweenness centrality for scene image categorization," International Conference on Image Processing, Melbourne, Australia, Sept. 15-18, 2013.Link DOI: 10.1109/ICIP.2013.6738670.
    • R. Wang, B. Bhanu and N. Thakoor, "Learning small gallery size for prediction of recognition performance on large populations," Pattern Recognition, June 7, 2013 (date of publication on-line). Volume 46, Issue 12, December 2013, Pages 3533-3547. Link DOI: 10.1016/j.patcog.2013.05.024.
    • Sebaa M, Nguyen TY, Paul RK, Mulchandani A, Liu H. Graphene and Carbon Nanotube-Graphene Hybrid Nanomaterials for Human Embryonic Stem Cell Culture. Materials Letters. 92: 122-125, 2013. DOI: 10.1016/j.matlet.2012.10.035, 11/12/2012 online first. DOI: 10.1016/j.matlet.2012.10.035.
    • S. Yang, L. An, N. Thakoor and B. Bhanu, "Improving Action Units Recognition Using Dense Flow-based Face Registration in Video," 10th IEEE International Conference on Automatic Face and Gesture Recognition, April 22-26, 2013, Shanghai, China. Link DOI: 10.1109/FG.2013.6553790.
    • X. Chen, L. An and B. Bhanu, "Improving large scale image retrieval using multi-level features," International Conference on Image Processing, Melbourne, Australia, Sept. 15-18, 2013. Link DOI: 10.1109/ICIP.2013.6738900.
    • X. Chen, L. An and B. Bhanu, "Tracklet association using soft-biometrics based appearance models," 7th ACM/IEEE International Conference on Distributed Smart Cameras (ICDSC), Palm Springs, CA, Oct. 29-Nov. 1, 2013.
    • Y. Li and B. Bhanu, "Game theoretic models for camera selection in a video network," Book Chapter in Wireless Sensors, Edited by Kris Iniewski, Springer, 2013. DOI: 10.1109/ICDSC.2009.5289342.
    • Z. Jin ad B. Bhanu, "Optimizing crowd simulation based on real video data," International Conference on Image Processing, Melbourne, Australia, Sept. 15-18, 2013. Link DOI: 10.1109/ICIP.2013.6738656.
  • 2012
    • Hwang Y, Granelli J, Lyubovitsky J (2012) The effects of zero- and non-zero length cross-linking reagents on the optical spectral properties and structures of collagen hydrogels, ACS Applied Materials and Interfaces 4, 261-267 (2012). DOI: 10.1021/am2013147.
    • Kieslich CA, Morikis D (2012) The two sides of complement C3d: evolution of electrostatics in a link between innate and adaptive immunity, PLoS Computational Biology.8:e1002840. DOI: 10.1371/journal.pcbi.1002840.
    • Liu Y, Song Y, Madahar V, Liao J (2012) Quantitative Analysis for Kineticd determinations of SUMO-specific Protease 1, Analytical Biochemistry. 422(1):14-21.
    • Petreaca ML, Dhall S, Serafino A, Do D, McLelland D, Lyubovitsky J, Schiller N, Martins-Green MM (2012) Deletion of a Tumor Necrosis Superfamily Gene in Mice Leads to Impaired Healing that Mimics Venous Ulcers in Humans, Wound Repair and Regeneration 20, 353-366. DOI: 10.1111/j.1524-475X.2012.00785.x.
    • Sebaa M, Dhillon S, Liu H (2012) Electrochemical Deposition and Evaluation of Electrically Conductive Polymer Coating on Biodegradable Magnesium Implants for Neural Applications, Journal of Materials Science: Materials in Medicine. DOI: 10.1007/s10856-012-4796-y, Online First, 10/27/2012. (PMID: 23104085)
    • Song Y, Liao J (2012) An in vitro Förster resonance energy transfer-based high-throughput screening assay for inhibitors of protein-protein interactions in SUMOylation pathway, Assay Drug Dev Technol. 10(4):336-43. DOI: 10.1089/adt.2011.0394.
    • Song Y, Liao J (2012) Determine the Intermediates and Dynamics of the SUMOylation Conjugation by FRET Technology in Vitro. Mol. Biosys.
    • Song Y, Liao J (2012) Systematic determinations of SUMOylation activation intermediates and dynamics by a sensitive and quantitative FRET assay, Mol Biosyst. 8(6):1723-9. DOI: 10.1039/c2mb05465e.
    • Szu JI, Eberle MM, Reynolds CL, Hsu MS, Park BH, Binder DK (2012) Thinned-skull cortical window technique for in vivo optical coherence tomography imaging, Journal of Visualized Experiments DOI: 10.3791/50053.